DRSC/TRiP Functional Genomics Resources

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Protein Alignment wkd and sgsm3

DIOPT Version :9

Sequence 1:NP_650089.1 Gene:wkd / 41390 FlyBaseID:FBgn0037917 Length:363 Species:Drosophila melanogaster
Sequence 2:NP_998495.1 Gene:sgsm3 / 406635 ZFINID:ZDB-GENE-040426-2635 Length:755 Species:Danio rerio


Alignment Length:313 Identity:91/313 - (29%)
Similarity:136/313 - (43%) Gaps:49/313 - (15%)


- Green bases have known domain annotations that are detailed below.


  Fly    72 DRCRK----GIPKSVRPKAWFYLSGAYLLKKKNPNV-YNELLEKPGN--PTTIEEIKKDKHRQFP 129
            ||.|.    |||.|:||:.|..|||| |.||:..:: |.|:::...|  .|..::|:||..|..|
Zfish   106 DRLRSLVLGGIPHSMRPQLWMRLSGA-LQKKRTSDISYREIVKNSSNDDTTAAKQIEKDLLRTMP 169

  Fly   130 FHEMFLDEQKVGQIELFNVLKAYSIYNPKVGFCQAQAPIAAFLLMHLPAEDAFWVFVSVC-DVYL 193
            .:..|.....||..:|..||:..:...|.:|:||....:.:.||:.|..|||.|:..::. |:..
Zfish   170 TNACFNTLTSVGVPKLRRVLRGLAWLYPDIGYCQGTGMVVSCLLLFLEEEDALWMMCALIEDLLP 234

  Fly   194 QDYFIPGLEVIQNDAGILEGLLKKTCPPVYRHLQKHKVEPLLYMTDWFLCAMTRTLPWETLLRVW 258
            ..||...|..:|.|..:|..|:.:..|.:.:.||:|.:|..|....|||.|....:....|||:|
Zfish   235 PSYFSSTLLGVQTDQRVLRQLIVQYLPRLDKLLQEHDIELSLITLHWFLTAFASVVDIRILLRIW 299

  Fly   259 DCFLAEGIRVIFKVALVIIGASLSRHKVRKTCTGLCETLAVLRSPEEHIVEEE---FIINNMMRL 320
            |....||..|:|:|                       ||.:|:..|:.:|..|   .|.|.:..|
Zfish   300 DLLFYEGSMVLFQV-----------------------TLGMLKIKEDELVSSENSASIFNTLSDL 341

  Fly   321 NLRVED------------FQIEHTRQKARRAKQKAQQEAESS--GSGNGHRRN 359
            ..::||            ..:........|.|..|...||.:  .|.|.|..|
Zfish   342 PSQLEDGAAVLGEAVRLAGSLSQENLDTHRHKHLAYILAEQAQLNSNNSHSLN 394

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
wkdNP_650089.1 RabGAP-TBC 114..277 CDD:366170 51/163 (31%)
sgsm3NP_998495.1 TBC 112..326 CDD:214540 72/237 (30%)
SH3_SGSM3 488..540 CDD:212747
RUN 567..720 CDD:280855
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG5210
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R540
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
43.840

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