DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment wkd and Sgsm2

DIOPT Version :10

Sequence 1:NP_650089.1 Gene:wkd / 41390 FlyBaseID:FBgn0037917 Length:363 Species:Drosophila melanogaster
Sequence 2:NP_001427045.1 Gene:Sgsm2 / 303304 RGDID:1306957 Length:1050 Species:Rattus norvegicus


Alignment Length:575 Identity:102/575 - (17%)
Similarity:157/575 - (27%) Gaps:270/575 - (46%)


- Green bases have known domain annotations that are detailed below.


  Fly    13 LCSTVSSC-------------------PDR----------------NGFYGGFQ--------RTD 34
            |||..|||                   |||                ..|||...        ||.
  Rat   497 LCSQGSSCLSCPSSSSPYAPPSHCSCTPDRLPLRLLCESMKRQIVSRAFYGWLAYCRHLSTVRTH 561

  Fly    35 ----------KPKEPLSKAQIIAREKKWLYMIDNWSIYM--SKNYKK---IRDRCRKGIPKSVRP 84
                      .|..|...:..:.:        |.||.|.  .||||:   :|.....|:...:|.
  Rat   562 LSALVHHNIIPPDRPPGASGGLTK--------DVWSKYQKDKKNYKELELLRQVYYGGVEHEIRK 618

  Fly    85 KAWFYLSGAY---LLKKKNPNV-------YNELL-------------EKPGNPTTIEEIKK---- 122
            ..|.:|.|.|   :.||:...|       |.::|             |:..:|.|:.:...    
  Rat   619 DVWPFLLGHYKFGMSKKEMEQVDAAVAARYQQVLAEWKACEVVVRQREREAHPATLTKFSSGSSI 683

  Fly   123 DKHRQFPFH-------EMFLD---------------------------------EQKVGQIEL-- 145
            |.|.|...|       ::|:.                                 ||:..:.|.  
  Rat   684 DSHVQRLVHRDSTISNDVFISVDDLEPPGPQDPEDSKPKQEREPGAGTPGTAAAEQQSVEFESPD 748

  Fly   146 --FNVLKAYSIYN---------PKVGFCQ-------AQAPIAA---FLLMHLPAEDAF------- 182
              ....:.||:.:         ..|||.:       ::.|..|   ||..|.|.::..       
  Rat   749 SGLPSSRNYSVASGIQSSLDEAQSVGFEEDGAGEEGSEEPATAAHTFLGPHDPDQEKLAPASELE 813

  Fly   183 --WVFVSVC---------------------DVYLQD----YF-IPGLEVIQN----------DAG 209
              ....:||                     ||...|    || .|.||.:::          |.|
  Rat   814 GGEELTAVCAATYTIELLDTVALNLHRIDKDVQRCDRNYWYFTTPNLERLRDIMCSYVWEHLDMG 878

  Fly   210 ILEGLLKKTCP------------PVYRHLQKH----------------KVEPLLYMTD------- 239
            .::|:.....|            ..:.||.|.                .:..|:.:.|       
  Rat   879 YVQGMCDLLAPLLVILDNDQLAYSCFSHLMKRMSQNFPNGGAMDTHFANMRSLIQILDSELFELM 943

  Fly   240 --------------WFLCAMTRTLPWETLLRVWDCFLAEGIRVIFKVALVIIGASLSRHKVRKTC 290
                          |||....|.|.:|.:..||:        ||:....:     .|.|.|    
  Rat   944 HQNGDYTHFYFCYRWFLLDFKRELLYEEVFAVWE--------VIWAARHI-----SSEHFV---- 991

  Fly   291 TGLCETLAVLRSPEEHIVEEEFIINNMMR-LNLRVEDFQIEHTRQKARRAKQKAQ 344
              |...||::.:..|.|.:......:::: .|.|.|....:...:.||....|.|
  Rat   992 --LFIALALVEAYREIIRDNNMDFTDIIKFFNERAERHDAQEILRIARDLVHKVQ 1044

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
wkdNP_650089.1 TBC 74..278 CDD:214540 62/387 (16%)
Sgsm2NP_001427045.1 None

Return to query results.
Submit another query.