DRSC/TRiP Functional Genomics Resources

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Protein Alignment wkd and gyp3

DIOPT Version :9

Sequence 1:NP_650089.1 Gene:wkd / 41390 FlyBaseID:FBgn0037917 Length:363 Species:Drosophila melanogaster
Sequence 2:NP_587829.1 Gene:gyp3 / 2539298 PomBaseID:SPCC4G3.09c Length:635 Species:Schizosaccharomyces pombe


Alignment Length:381 Identity:110/381 - (28%)
Similarity:171/381 - (44%) Gaps:68/381 - (17%)


- Green bases have known domain annotations that are detailed below.


  Fly    24 NGFYGGFQRTDKPKEPLSKAQIIAREKKW-LYMIDNW--------SIYMSKNYKKIRDRCRKGIP 79
            |.:||.:.|           .:..||::| |::.:|.        ||:.|::.|..| ..|||||
pombe   250 NTWYGPYSR-----------YLERREQRWKLFLQENGIDYIHQSPSIFPSRSAKTQR-FIRKGIP 302

  Fly    80 KSVRPKAWFYLSGAYLLKKKNPNVYNEL-----LEKPGNPTTIEEIKKDKHRQFPFHEMF----- 134
            ...|..||||.||.|.|.::||.:|..|     ::||.:...||   :|.:|.||.:..|     
pombe   303 PEYRGNAWFYYSGGYELLQRNPKLYETLWRCACIKKPSDSDLIE---RDLYRTFPDNVHFRHKSK 364

  Fly   135 ------------LDEQKVGQI-ELFNVLKAYSIYNPKVGFCQAQAPIAAFLLMHLPAEDAFWVFV 186
                        .:|..|..| :|..||..::.|.|:.|:||:...:|.|.|:.:..|.|||:.|
pombe   365 HSRNSSDASEHSSEEPDVPMISKLRRVLMTFATYLPENGYCQSLNFLAGFFLLFMSEEKAFWMLV 429

  Fly   187 SVCDVYLQDYFIPGLEVIQNDAGILEGLLKKTCPPVYRHLQKH-----------KVEPLLYMT-D 239
            ..|..||.......||....|..:|...::::.|.|:..:..:           |:.|:..:| .
pombe   430 ITCRKYLPKMHDANLEGANIDQSVLMASVRESLPAVWSRISLNFDGIPVNDIVAKLPPITLVTAA 494

  Fly   240 WFLCAMTRTLPWETLLRVWDCFLAEGIRVIFKVALVI--IGASLSRHKVRKTCTGLCETLAVLRS 302
            ||:.|....||.||.|||||||..||.:|:|..||.|  :|....:.|..:|     |...|::.
pombe   495 WFMSAFVGILPTETALRVWDCFFYEGSKVLFMTALCILRLGEDDIKSKSEQT-----EVFQVIQD 554

  Fly   303 PEEHIVEEEFIINNMMRLNLRVEDFQ--IEHTRQKARRAKQKAQQEAESSGSGNGH 356
            ..:.:::....::...|.|.|....|  ||..|:|..:.:..:..:.|.|.|...|
pombe   555 LPKSLLDANAFLSLCFRRNFRRTPSQKDIERRREKVAKKRNSSASKLEMSDSSKHH 610

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
wkdNP_650089.1 RabGAP-TBC 114..277 CDD:366170 59/194 (30%)
gyp3NP_587829.1 COG5210 22..576 CDD:227535 100/345 (29%)
TBC 297..540 CDD:214540 80/245 (33%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG5210
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R540
SonicParanoid 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
32.840

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