DRSC/TRiP Functional Genomics Resources

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Protein Alignment wkd and tbc-9

DIOPT Version :9

Sequence 1:NP_650089.1 Gene:wkd / 41390 FlyBaseID:FBgn0037917 Length:363 Species:Drosophila melanogaster
Sequence 2:NP_502598.2 Gene:tbc-9 / 178316 WormBaseID:WBGene00012868 Length:1247 Species:Caenorhabditis elegans


Alignment Length:327 Identity:89/327 - (27%)
Similarity:147/327 - (44%) Gaps:53/327 - (16%)


- Green bases have known domain annotations that are detailed below.


  Fly     7 SLDTISLCSTVSSCPDRNGFYGGFQRTDKPKEPLSKAQIIAREKKWLYMIDNWSIYMSK------ 65
            |..:.|....:..||....:..|...:||           .|||        |:.|:.:      
 Worm   430 SSSSSSFDKLIWDCPLIEKYPFGADASDK-----------CREK--------WNKYLQEYGTGVC 475

  Fly    66 NYK--KIRDRCRKGIPKSVRPKAWFYLSGAYLLKKKNPNVYNELLEKPGN--PTTIEEIKKDKHR 126
            .|:  ::.....:|:|..:|.:.|...|||......||..|.|||.|...  ...:|||::|.||
 Worm   476 MYRTVELHRLLLEGVPLQLRGQIWMVCSGAAAEMALNPGYYRELLHKNQGVYSVALEEIERDLHR 540

  Fly   127 QFPFHEMFLDEQKVGQIELFNVLKAYSIYNPKVGFCQAQAPIAAFLLMHLPAEDAFWVFVSVCDV 191
            ..|.|..|  :|..|...|..:|.||:..||.:|:|||...:.:.||:....|:|||:.|:||:.
 Worm   541 SLPEHPAF--QQGPGIDALRRILTAYAFRNPNIGYCQAMNIVGSVLLLFTKEEEAFWLLVAVCER 603

  Fly   192 YLQDYF---IPGLEVIQNDAGILEGLLKKTCPPVYRHLQKHKVEPLLYMTDWFLCAMTRTLPWET 253
            .|.||:   :.|..|   |.|:...|:::..|.|...|.:..::.::.:: |||......:.::.
 Worm   604 LLPDYYNTKVVGALV---DQGVFSELVERLLPTVGAQLTRLGLDDMVALS-WFLTVFLSAIKFDA 664

  Fly   254 LLRVWDCFLAEGIRVIFKVALVIIGASLSRHKVRKTCTGLCET------LAVLRSPEEHIVEEEF 312
            .:|:.|.|..||.|::|:|||.::   ....|:      :||:      |..|....|.|.|.:.
 Worm   665 AVRILDLFFFEGARLMFQVALEML---KENEKL------ICESRDDGEILMSLAKYTESIYEGDT 720

  Fly   313 II 314
            ::
 Worm   721 VV 722

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
wkdNP_650089.1 RabGAP-TBC 114..277 CDD:366170 54/165 (33%)
tbc-9NP_502598.2 PH-GRAM1_TCB1D9_TCB1D9B 154..253 CDD:275420
PH-GRAM2_TCB1D9_TCB1D9B 309..406 CDD:270161
TBC 489..695 CDD:214540 69/220 (31%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R540
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.940

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