DRSC/TRiP Functional Genomics Resources

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Protein Alignment wkd and SGSM1

DIOPT Version :9

Sequence 1:NP_650089.1 Gene:wkd / 41390 FlyBaseID:FBgn0037917 Length:363 Species:Drosophila melanogaster
Sequence 2:NP_001035037.1 Gene:SGSM1 / 129049 HGNCID:29410 Length:1148 Species:Homo sapiens


Alignment Length:149 Identity:32/149 - (21%)
Similarity:59/149 - (39%) Gaps:26/149 - (17%)


- Green bases have known domain annotations that are detailed below.


  Fly   144 ELFNVLKAYSIYNPKVGFCQAQAPIAAFLLMHLPAED-AFWVFVSVCDVYLQDY---------FI 198
            :|.|::.:|...:.::|:.|....:.|.||:.|..|. ||..|..:.....|::         |.
Human   960 KLRNIMCSYIWQHIEIGYVQGMCDLLAPLLVILDDEALAFSCFTELMKRMNQNFPHGGAMDTHFA 1024

  Fly   199 PGLEVIQ-NDAGILEGLLKKTCPPVYRHLQKHKVEPLLYMTDWFLCAMTRTLPWETLLRVWDCFL 262
            ....:|| .|:.:.| |:.:...  |.|        ..:...|||....|.|.::.:..||:...
Human  1025 NMRSLIQILDSELFE-LMHQNGD--YTH--------FYFCYRWFLLDFKRELVYDDVFLVWETIW 1078

  Fly   263 A----EGIRVIFKVALVII 277
            |    .....:..:||.::
Human  1079 AAKHVSSAHYVLFIALALV 1097

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
wkdNP_650089.1 RabGAP-TBC 114..277 CDD:366170 32/147 (22%)
SGSM1NP_001035037.1 RUN 44..188 CDD:280855
PH_RUTBC 254..425 CDD:275431
Important for interaction with RAB9A and RAB9B. /evidence=ECO:0000250|UniProtKB:Q8BPQ7 256..297
Required for interaction with RAP family members 301..350
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 377..411
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 700..830
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 871..894
TBC <936..1105 CDD:214540 32/149 (21%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG5210
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
User_Submission 00.000 Not matched by this tool.
10.900

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