DRSC/TRiP Functional Genomics Resources

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Protein Alignment wkd and usp6nl2

DIOPT Version :9

Sequence 1:NP_650089.1 Gene:wkd / 41390 FlyBaseID:FBgn0037917 Length:363 Species:Drosophila melanogaster
Sequence 2:XP_031756547.1 Gene:usp6nl2 / 100496433 XenbaseID:XB-GENE-22169515 Length:848 Species:Xenopus tropicalis


Alignment Length:337 Identity:114/337 - (33%)
Similarity:163/337 - (48%) Gaps:29/337 - (8%)


- Green bases have known domain annotations that are detailed below.


  Fly    22 DRNGFYGGFQRTDK-PKEPLSKAQIIAREKKWLYMIDNWSIYMSKNYKKIRDRCRKGIPKSVRPK 85
            ||.||....:...: .:|...|.|.|.|..|||.|:..||.|  :|.:|:..|..||||..||.:
 Frog    45 DRFGFLHEHELPSRSAQEEKQKLQEIERVDKWLKMLKKWSKY--RNSEKMYRRVYKGIPLQVRGQ 107

  Fly    86 AWFYLSGAYLLKKKNPNVYNEL--LEKPGNPTTIEEIKKDKHRQFPFHEMFLDEQKVGQIELFNV 148
            .|..|......|.||...|.::  |.|..: |.|::|..|.:|.|..|.||.:...|.|..||:|
 Frog   108 VWSLLLDVEETKLKNEGKYEKIKDLAKTYS-TEIKQIDLDINRTFRNHIMFRERYGVKQRALFDV 171

  Fly   149 LKAYSIYNPKVGFCQAQAPIAAFLLMHLPAEDAFWVFVSVCDVY---LQDYFIPGLEVIQNDAGI 210
            |.|||:||.:|.:||..:.|||.|||:|..|||||....:....   :..:||||...:|.....
 Frog   172 LSAYSVYNTEVSYCQGMSQIAAVLLMYLNEEDAFWALAQLLTNQRHAMHGFFIPGFPKLQRFQSH 236

  Fly   211 LEGLLKKTCPPVYRHLQKHKVEPLLYMTDWFL-CAMTRTLPWETLLRVWDCFLAEGIRVIFKVAL 274
            .|.:|.|..|.:.:|:.|..:...:|.|.||| |.:.|| |:...||:||.::.||.||:..:|.
 Frog   237 HEQILSKVFPKLKKHMDKEDMSTGIYTTKWFLQCFLDRT-PFTLTLRLWDIYILEGERVLPAMAY 300

  Fly   275 VIIGASLSRHKVRKTCTGLCETLAVLRSPEEHIVEEEFIINNMMRLNLRVEDFQIEHTRQKARRA 339
            .|    |..||.|           :|:.|.|.:  .||:...:.| :|..:|..:....|.:...
 Frog   301 TI----LKLHKKR-----------LLKMPMEDL--REFLQEKIAR-SLSYDDDIVVEQLQTSMAE 347

  Fly   340 KQKAQQEAESSG 351
            .:|.:.|....|
 Frog   348 LRKMKLELPPPG 359

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
wkdNP_650089.1 RabGAP-TBC 114..277 CDD:366170 64/166 (39%)
usp6nl2XP_031756547.1 TBC 96..302 CDD:214540 78/207 (38%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D976276at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
11.010

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