DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment dpr5 and Igsf9

DIOPT Version :9

Sequence 1:NP_650080.3 Gene:dpr5 / 41381 FlyBaseID:FBgn0037908 Length:336 Species:Drosophila melanogaster
Sequence 2:NP_001100667.1 Gene:Igsf9 / 304982 RGDID:1304566 Length:1179 Species:Rattus norvegicus


Alignment Length:211 Identity:51/211 - (24%)
Similarity:82/211 - (38%) Gaps:46/211 - (21%)


- Green bases have known domain annotations that are detailed below.


  Fly   151 IDNSDEWVLKIVSVQQRDAGVYECQV-STEPKISLAYKLVVVTSKAQILANRELFIQSGSDINLT 214
            :.|...|:.:   |::..||.|.||. |||..::...:|:|:.....::......:.:..|::|.
  Rat   186 VRNGTLWIRR---VERGSAGDYTCQASSTEGSVTHTTQLLV
LGPPVIVVPPNNNTVNASQDVSLA 247

  Fly   215 CIAPQAPGPYTHMLWHKDTELVSDSARGGIRVESEQQMKTSNLVISRVQHTDSGNYTCSADNS-- 277
            |.|...|...|:. |.:|...|...:|...||   :.:...:|.:...|..|:|:|||...|.  
  Rat   248 CRAEAYPANLTYS-WFQDRINVFHISRLQSRV---RILVDGSLWLQATQPDDAGHYTCVPSNGFP 308

  Fly   278 --NSDSVFVHIIKSEQHAAMQHELGSRLLLPPLPLLLLAV----------LLVVL---------- 320
              .|.|.::.::...|...|..|       .|||:.:..|          ||.|.          
  Rat   309 HPPSASAYLTVLYPAQVTVMPPE-------TPLPIGMRGVIRCPVRANPPLLFVTWTKDGQALQL 366

  Fly   321 -------LGPTSSLQI 329
                   |||..||.|
  Rat   367 DKFPGWSLGPEGSLVI 382

Known Domains:


Indicated by green bases in alignment.

Software error:

Illegal division by zero at /www/www.flyrnai.org/docroot/cgi-bin/DRSC_prot_align.pl line 591.

For help, please send mail to the webmaster (ritg@hms.harvard.edu), giving this error message and the time and date of the error.

GeneSequenceDomainRegion External IDIdentity
dpr5NP_650080.3 V-set 95..191 CDD:284989 12/40 (30%)
IG_like 98..179 CDD:214653 9/28 (32%)
IG_like 206..278 CDD:214653 20/75 (27%)
Ig 211..278 CDD:143165 19/70 (27%)
Igsf9NP_001100667.1 IG 28..110 CDD:214652
Ig strand A 136..139 CDD:409353
IG_like 143..223 CDD:214653 12/39 (31%)
Ig strand A' 145..148 CDD:409353
Ig strand B 154..161 CDD:409353
Ig strand C 167..172 CDD:409353
Ig strand C' 175..177 CDD:409353