DRSC/TRiP Functional Genomics Resources

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Protein Alignment dpr5 and Lsamp

DIOPT Version :9

Sequence 1:NP_650080.3 Gene:dpr5 / 41381 FlyBaseID:FBgn0037908 Length:336 Species:Drosophila melanogaster
Sequence 2:XP_038944182.1 Gene:Lsamp / 29561 RGDID:71102 Length:378 Species:Rattus norvegicus


Alignment Length:195 Identity:56/195 - (28%)
Similarity:85/195 - (43%) Gaps:33/195 - (16%)


- Green bases have known domain annotations that are detailed below.


  Fly    93 DNTTDREVIAALGTTARLHCRVRHLGDRAVSWIRQRDLHILTIGIMTYTNDQRFLARHID----N 153
            ||.|.|:     |.||.|.|.|.....: |:|:.:.       ||:...:|:..|...::    :
  Rat    56 DNITVRQ-----GDTAILRCVVEDKNSK-VAWLNRS-------GIIFAGHDKWSLDPRVELEKRH 107

  Fly   154 SDEWVLKIVSVQQRDAGVYECQVST--EPKISLAYKLVVVTSKAQILANRELFIQSGSDINLTCI 216
            :.|:.|:|..|...|.|.|.|.|.|  |||.|..|.:|.|..|...::: ::.:..||::.|.|:
  Rat   108 ALEYSLRIQKVDVYDEGSYTCSVQTQHEPKTSQVYLIVQVPPKISNISS-DVTVNEGSNVTLVCM 171

  Fly   217 APQAPGPYTHMLWHKDTELVSDSARGGIRVESEQQMKTSNLVISRVQHTDSGNYTCSADNSNSDS 281
            |...|.|.  :.|...|.|       |...|.|::.    |.|..:....||.|.|.|.|..|.:
  Rat   172 ANGRPEPV--ITWRHLTPL-------GREFEGEEEY----LEILGITREQSGKYECKAANEVSSA 223

  Fly   282  281
              Rat   224  223

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
dpr5NP_650080.3 V-set 95..191 CDD:284989 30/101 (30%)
IG_like 98..179 CDD:214653 23/86 (27%)
IG_like 206..278 CDD:214653 21/71 (30%)
Ig 211..278 CDD:143165 19/66 (29%)
LsampXP_038944182.1 Ig 55..145 CDD:416386 31/101 (31%)
FR1 55..71 CDD:409353 8/19 (42%)
Ig strand A' 56..62 CDD:409353 3/5 (60%)
Ig strand B 64..72 CDD:409353 4/7 (57%)
CDR1 72..76 CDD:409353 1/3 (33%)
FR2 77..84 CDD:409353 2/7 (29%)
Ig strand C 77..83 CDD:409353 2/6 (33%)
CDR2 85..95 CDD:409353 3/16 (19%)
Ig strand C' 87..90 CDD:409353 1/2 (50%)
Ig strand C' 92..95 CDD:409353 1/2 (50%)
FR3 96..131 CDD:409353 9/34 (26%)
Ig strand D 100..107 CDD:409353 0/6 (0%)
Ig strand E 110..116 CDD:409353 2/5 (40%)
Ig strand F 123..131 CDD:409353 3/7 (43%)
CDR3 132..136 CDD:409353 1/3 (33%)
Ig strand G 136..145 CDD:409353 4/8 (50%)
FR4 138..145 CDD:409353 2/6 (33%)
Ig_3 148..218 CDD:404760 21/83 (25%)
Ig strand A' 155..160 CDD:409353 0/5 (0%)
Ig strand B 166..173 CDD:409353 2/6 (33%)
Ig strand C 179..184 CDD:409353 1/6 (17%)
Ig strand D 190..193 CDD:409353 0/2 (0%)
Ig strand E 197..203 CDD:409353 2/9 (22%)
Ig strand F 210..217 CDD:409353 3/6 (50%)
Ig strand G 224..232 CDD:409353 56/195 (29%)
Ig_3 235..311 CDD:404760
Ig strand B 252..256 CDD:409353
Ig strand C 265..269 CDD:409353
Ig strand E 290..294 CDD:409353
Ig strand F 304..309 CDD:409353
Ig strand G 318..321 CDD:409353
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3510
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.810

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