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Protein Alignment PGRP-LB and PGRP-LA
DIOPT Version :9
Sequence 1: | NP_001247052.1 |
Gene: | PGRP-LB / 41379 |
FlyBaseID: | FBgn0037906 |
Length: | 255 |
Species: | Drosophila melanogaster |
Sequence 2: | NP_996026.1 |
Gene: | PGRP-LA / 39062 |
FlyBaseID: | FBgn0035975 |
Length: | 368 |
Species: | Drosophila melanogaster |
Alignment Length: | 184 |
Identity: | 58/184 - (31%) |
Similarity: | 90/184 - (48%) |
Gaps: | 20/184 - (10%) |
- Green bases have known domain annotations that are detailed below.
Fly 40 HMQQANLGDGVATARLLSRSDWGA-------RLPKSVEHFQGPAPYVIIHHSYMPAV-CYSTPDC 96
|....|||:| ..::.|..||| .:| .:.|.|||:|.|..:.:: |.:...|
Fly 171 HQTFPNLGNG---HLVVDREQWGASKNSHGLTIP-----LKRPIPYVLITHIGVQSLPCDNIYKC 227
Fly 97 MKSMRDMQDFHQLERGWNDIGYSFGIGGDGMIYTGRGFNVIGAHAPKYNDKSVGIVLIGDWRTEL 161
...||.:||....|:|..||..:|.:..:|.||.|||:: .|..|.::::.|..:||:....
Fly 228 SIKMRTIQDSAIAEKGLPDIQSNFYVSEEGNIYVGRGWD----WANTYANQTLAITFMGDYGRFK 288
Fly 162 PPKQMLDAAKNLIAFGVFKGYIDPAYKLLGHRQVRDTECPGGRLFAEISSWPHF 215
|..:.|:..:.|:|..|....||..|||:...|.:.|..||..::.||.:||||
Fly 289 PGPKQLEGVQFLLAHAVANRNIDVDYKLVAQNQTKVTRSPGAYVYQEIRNWPHF 342
|
Known Domains:
Indicated by green bases in alignment.
Gene | Sequence | Domain | Region |
External ID | Identity |
PGRP-LB | NP_001247052.1 |
PGRP |
53..195 |
CDD:128941 |
43/149 (29%) |
PGRP-LA | NP_996026.1 |
PGRP |
181..322 |
CDD:128941 |
43/149 (29%) |
Information from Original Tools:
Tool |
Simple Score |
Weighted Score |
Original Tool Information |
BLAST Result |
Score |
Score Type |
Cluster ID |
Compara |
0 | 0.000 |
Not matched by this tool. |
Domainoid |
0 | 0.000 |
Not matched by this tool. |
eggNOG |
0 | 0.000 |
Not matched by this tool. |
Homologene |
0 | 0.000 |
Not matched by this tool. |
Inparanoid |
0 | 0.000 |
Not matched by this tool. |
Isobase |
0 | 0.000 |
Not matched by this tool. |
OMA |
0 | 0.000 |
Not matched by this tool. |
OrthoDB |
1 |
1.010 |
- |
- |
|
D1110472at2759 |
OrthoFinder |
0 | 0.000 |
Not matched by this tool. |
OrthoInspector |
0 | 0.000 |
Not matched by this tool. |
orthoMCL |
0 | 0.000 |
Not matched by this tool. |
Panther |
1 |
1.100 |
- |
- |
P |
PTHR11022 |
Phylome |
1 |
0.910 |
- |
- |
|
|
RoundUp |
0 | 0.000 |
Not matched by this tool. |
SonicParanoid |
0 | 0.000 |
Not matched by this tool. |
|
3 | 3.020 |
|
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