DRSC/TRiP Functional Genomics Resources

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Protein Alignment PGRP-LB and PGRP-LA

DIOPT Version :9

Sequence 1:NP_001247052.1 Gene:PGRP-LB / 41379 FlyBaseID:FBgn0037906 Length:255 Species:Drosophila melanogaster
Sequence 2:NP_996026.1 Gene:PGRP-LA / 39062 FlyBaseID:FBgn0035975 Length:368 Species:Drosophila melanogaster


Alignment Length:184 Identity:58/184 - (31%)
Similarity:90/184 - (48%) Gaps:20/184 - (10%)


- Green bases have known domain annotations that are detailed below.


  Fly    40 HMQQANLGDGVATARLLSRSDWGA-------RLPKSVEHFQGPAPYVIIHHSYMPAV-CYSTPDC 96
            |....|||:|   ..::.|..|||       .:|     .:.|.|||:|.|..:.:: |.:...|
  Fly   171 HQTFPNLGNG---HLVVDREQWGASKNSHGLTIP-----LKRPIPYVLITHIGVQSLPCDNIYKC 227

  Fly    97 MKSMRDMQDFHQLERGWNDIGYSFGIGGDGMIYTGRGFNVIGAHAPKYNDKSVGIVLIGDWRTEL 161
            ...||.:||....|:|..||..:|.:..:|.||.|||::    .|..|.::::.|..:||:....
  Fly   228 SIKMRTIQDSAIAEKGLPDIQSNFYVSEEGNIYVGRGWD----WANTYANQTLAITFMGDYGRFK 288

  Fly   162 PPKQMLDAAKNLIAFGVFKGYIDPAYKLLGHRQVRDTECPGGRLFAEISSWPHF 215
            |..:.|:..:.|:|..|....||..|||:...|.:.|..||..::.||.:||||
  Fly   289 PGPKQLEGVQFLLAHAVANRNIDVDYKLVAQNQTKVTRSPGAYVYQEIRNWPHF 342

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
PGRP-LBNP_001247052.1 PGRP 53..195 CDD:128941 43/149 (29%)
PGRP-LANP_996026.1 PGRP 181..322 CDD:128941 43/149 (29%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1110472at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - P PTHR11022
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
33.020

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