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Protein Alignment PGRP-LB and PGRP-LD
DIOPT Version :9
Sequence 1: | NP_001247052.1 |
Gene: | PGRP-LB / 41379 |
FlyBaseID: | FBgn0037906 |
Length: | 255 |
Species: | Drosophila melanogaster |
Sequence 2: | NP_001137893.1 |
Gene: | PGRP-LD / 3771920 |
FlyBaseID: | FBgn0260458 |
Length: | 327 |
Species: | Drosophila melanogaster |
Alignment Length: | 139 |
Identity: | 32/139 - (23%) |
Similarity: | 59/139 - (42%) |
Gaps: | 17/139 - (12%) |
- Green bases have known domain annotations that are detailed below.
Fly 79 VIIHHSYMPAVCYSTPDCMKSMRDMQDFHQLERGW-NDIGYSFGIGGDGMIYTGRGFNVIGAHAP 142
||..|: .:.:|.....|: .|:|||.. .::.|:|.:.||..::..:|::....:..
Fly 197 VIFTHT-------GSNECHDDCPDV--LHKLERSHVGELPYNFLVAGDCQVFEAQGWHYRSQYPR 252
Fly 143 KYND-KSVGIVLIGDWRTELPPKQMLDAAKNLIAFGVFKGYIDPAYKLLGHRQVRDTECPGGRLF 206
..|. .|:.:..:|::....|....|.||:.||...:.:..:.|.|:|.......|. |.
Fly 253 DLNGIDSLVMAFVGNFSGRPPIDCQLMAAQALILESLKRRILQPIYQLFVLGSYTDA------LQ 311
Fly 207 AEISSWPHF 215
.|:..|||:
Fly 312 RELRHWPHY 320
|
Known Domains:
Indicated by green bases in alignment.
Gene | Sequence | Domain | Region |
External ID | Identity |
PGRP-LB | NP_001247052.1 |
PGRP |
53..195 |
CDD:128941 |
26/117 (22%) |
PGRP-LD | NP_001137893.1 |
PGRP |
169..306 |
CDD:128941 |
26/117 (22%) |
Information from Original Tools:
Tool |
Simple Score |
Weighted Score |
Original Tool Information |
BLAST Result |
Score |
Score Type |
Cluster ID |
Compara |
0 | 0.000 |
Not matched by this tool. |
Domainoid |
0 | 0.000 |
Not matched by this tool. |
eggNOG |
0 | 0.000 |
Not matched by this tool. |
Homologene |
0 | 0.000 |
Not matched by this tool. |
Inparanoid |
0 | 0.000 |
Not matched by this tool. |
Isobase |
0 | 0.000 |
Not matched by this tool. |
OMA |
0 | 0.000 |
Not matched by this tool. |
OrthoDB |
0 | 0.000 |
Not matched by this tool. |
OrthoFinder |
0 | 0.000 |
Not matched by this tool. |
OrthoInspector |
0 | 0.000 |
Not matched by this tool. |
orthoMCL |
0 | 0.000 |
Not matched by this tool. |
Panther |
1 |
1.100 |
- |
- |
P |
PTHR11022 |
Phylome |
1 |
0.910 |
- |
- |
|
|
RoundUp |
0 | 0.000 |
Not matched by this tool. |
SonicParanoid |
0 | 0.000 |
Not matched by this tool. |
|
2 | 2.010 |
|
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