DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Blm and tlh2

DIOPT Version :9

Sequence 1:NP_524319.2 Gene:Blm / 41366 FlyBaseID:FBgn0002906 Length:1487 Species:Drosophila melanogaster
Sequence 2:NP_001343051.1 Gene:tlh2 / 5802845 PomBaseID:SPBCPT2R1.08c Length:1919 Species:Schizosaccharomyces pombe


Alignment Length:567 Identity:155/567 - (27%)
Similarity:243/567 - (42%) Gaps:124/567 - (21%)


- Green bases have known domain annotations that are detailed below.


  Fly   560 PDDYLAQSMMLDGDLEE--EQLNGPTQGTTT-------SGMDDDEDDLEGLLAEIEDEHQKMQGR 615
            |.||.|.........:|  :..:.||.|...       ..:|..|:.|...||.:..| |.::|.
pombe  1051 PSDYFANFFRASYKWQELLQIRDNPTHGLLVETKHPFIKRVDQLEEALNEKLARLVGE-QMVEGD 1114

  Fly   616 RSEFNGYSYKELEAVKVKEKHKETPINISLDDDGFPEYDEAMFEQMHSQAAANKSRVSSAGPSTS 680
                     ||.:... :||:|                ||...|.  :|...|:   .|......
pombe  1115 ---------KEKDKTN-EEKNK----------------DEVKAEM--TQPVVNQ---DSHDLQDQ 1148

  Fly   681 KSVVPTKQTSALHSQKLSGNFHANVHNDGITGEFDGQKFEHSTRLMH---GLSYSFGLKS-FRP- 740
            .:..||..|:          ||   :..|:..       ...|.:.|   .||..:||:: ||. 
pombe  1149 LATTPTAPTA----------FH---YRPGLLQ-------PSQTSVQHCCWALSQYYGLEAKFRSL 1193

  Fly   741 NQLQVINATLLGN-DCFVLMPTGGGKSLCYQLPAIL-----TEG-----VTIVISPLKSLIFD-- 792
            .|.|.:..:||.. :...::||||||||.:.:||::     |.|     ||:|:.|:.||..|  
pombe  1194 KQFQSVYFSLLNRMNLITVLPTGGGKSLSFLIPALIEKKRQTPGKVMNMVTLVLVPMMSLRQDMM 1258

  Fly   793 -QINKLASLDICAKSLSGEQKMADVMAIYRD----LESQPPMVKLLYVTPEKISSSARFQDTLDT 852
             ::|:...| :|:.:.:.          ::|    ||:|.|.:.:|.......:|..||.::|.|
pombe  1259 LRVNEKGLL-VCSGNWTA----------FKDVRLTLETQLPDLFILTYESALTNSGLRFFESLAT 1312

  Fly   853 LNSNNYISRFVIDEAHCVSQWGHDFRPDYKKLGVLKKRFPNVPTIALTATATPRVRLDILAQLNL 917
            |..   ::|.||||||.:...| .:|....:...|...:  .|...|:|| .|| :|:::|:...
pombe  1313 LGR---LARVVIDEAHLLLTSG-AWRTALSRASRLSGLY--APLHLLSAT-FPR-QLEMVARQTF 1369

  Fly   918 KNCKWFL----SSFNRSNLRYRVLPKKGVSTLDDISRYIRSKPQHFSG----IIYCLSRKECDET 974
              |..|.    :|..|.|:.|.:.|......|.|: |.:..:.:.|.|    ||:|.::|:.:..
pombe  1370 --CTNFYVLRETSTARENIFYFLHPYDNTEFLLDL-RTLMKRTKVFEGDGRAIIFCRTKKDVEYI 1431

  Fly   975 SKKMCKDGVRA---VSYHAGLTDTDRESRQKDW-----LTGKMRVICATVAFGMGIDKPDVRFVL 1031
            .:::.:..:.|   |:.:.|  |...|.||.::     ..||.|::.||.|||:||:...||.|:
pombe  1432 HRRLHQSDLFAHTHVTIYTG--DVSDEERQMNFDAFRNANGKTRIMIATKAFGLGINYMGVRLVV 1494

  Fly  1032 HYSLPKSIEGYYQEAGRAGRDGDVADCILYYNYSDMLRIKKMLDSDK 1078
            ||.||.|...|.||.|||||||..|...|:|...|......:.||.|
pombe  1495 HYGLPASSMDYVQETGRAGRDGKYAIAALFYEKYDSTWSSYVEDSMK 1541

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
BlmNP_524319.2 RQC 1140..1253 CDD:286470
HRDC 1286..1352 CDD:278967
RecQ 729..1359 CDD:223588 120/386 (31%)
DEAD 739..908 CDD:278688 55/187 (29%)
HELICc 931..1061 CDD:238034 48/141 (34%)
RecQ_Zn_bind 1066..1134 CDD:292742 4/13 (31%)
tlh2NP_001343051.1 TDT <4..161 CDD:322553
DUF3505 140..258 CDD:314828
RecQ 1179..1817 CDD:223588 120/387 (31%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG0514
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.810

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