DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Blm and recql4

DIOPT Version :9

Sequence 1:NP_524319.2 Gene:Blm / 41366 FlyBaseID:FBgn0002906 Length:1487 Species:Drosophila melanogaster
Sequence 2:XP_001920631.5 Gene:recql4 / 567383 ZFINID:ZDB-GENE-091112-2 Length:1459 Species:Danio rerio


Alignment Length:1574 Identity:355/1574 - (22%)
Similarity:572/1574 - (36%) Gaps:447/1574 - (28%)


- Green bases have known domain annotations that are detailed below.


  Fly    88 YLDLSVSPLAKLSAKKYARDSPKKPTSLDLSVSPLAELLAKKSDRDSPKKPVQNENSY-TYRGLS 151
            |.|:.:  |.|...:.:.:.:.:||               .|.|.|  |.|.:....| .||.|.
Zfish     4 YNDVKI--LLKKWEQSFFQTNNRKP---------------NKDDID--KAPEETRQLYKEYRSLK 49

  Fly   152 ESPVENKSIGDTLRKPPQKERKT--SIVWLSDSPEK-------KVTQNERKILDSPLQRFSFEDF 207
            .:...|.::.::..|||:.:..|  |..|.|....|       |::.::::.|.:..|.|..:..
Zfish    50 VAKERNDAVKESQTKPPESQSSTDGSGCWGSHLNRKNLPVALPKLSSDDKETLKASAQYFGMKLK 114

  Fly   208 PNKENGNRHHLLTLPDSPPPPQPVKKPEKTMWQNETKTIQDKDSPANPLVSNNLASISTLLDSSR 272
            .|.....:....:|..:..|.   :.|:|.:     |...|.::.|..:.|:.....:|..|.|.
Zfish   115 NNLGGLTKERSFSLKKAATPR---RTPQKLI-----KDTVDSNAAATDVESHTPKPANTCPDPSA 171

  Fly   273 AP-------------------------NTYKGSSRNLFE-------------------------- 286
            ||                         :|..||::...|                          
Zfish   172 APVQAAKMDFEDDPSDPFPSITPSKPCSTVVGSAQKSVERVQFLRQSITRRFSSVDSGWLARCQV 236

  Fly   287 ----DSPEKSGSGEQGYKLGSAKENEIPTKPATASLERNSVTSSPSPAAPLKPRYSVAFDNSLAD 347
                :.|:|..:|....    ||:.:...:||..|...:..|.....:....|.....|.|:|..
Zfish   237 FDEVEEPQKPVAGNSEL----AKDEKSFLQPAVGSKSGSPGTHGERVSHKNSPNEGQTFSNTLLG 297

  Fly   348 YLKDLAQNDNFSID---PNKQNTETLKSTLGFFRNTYVELMEKYCSLIDQIPAMHFNEIAGFQPN 409
            ..|.....:...||   .:.:|...|.:..| ...|:.|.:....|...::...:.:|...|.||
Zfish   298 RKKSSLPEEEAQIDLVTSSVRNNVVLNAISG-SPGTHGERVSLKSSPKLRVDDENLSEEPEFTPN 361

  Fly   410 TFLKLKVMRQKFKARTQLVQNSLDKKESQLKAEQEA------LEKEEIEMQAEQAQQTVLSSSSP 468
            |      .::|.|||..  |:|..|.:.: |.::||      .|.||.|...::.::|....::.
Zfish   362 T------KQRKTKARKD--QDSGAKTKGR-KRQREADNGDDMDESEEKEGGVKKRRKTKKGETAG 417

  Fly   469 EKSRPIMPLPKVQEIKDEKIPNRNQLIHDLCGEPDNFSPPSSPRDTQLIPKRQQLINDLCGEPDD 533
            |..      ||.:..|..|:..     .|..|..:|..|          .||.....:|.||.|:
Zfish   418 EDQ------PKKRGKKKGKVEE-----DDDDGSSENKKP----------QKRAMPQENLLGEVDE 461

  Fly   534 FSP--------------PSKQNDPHLLR---KCEELVHDLCEEPDDYLAQSMMLDGDLEEEQLNG 581
            ...              |:|..|.:.::   |.:..|............|..|....|:.|:..|
Zfish   462 EEARAAAYAMKNTVRVRPTKNTDGNFVKINLKKKSHVKGFALRGAALRKQMYMQKFQLKGERFGG 526

  Fly   582 ------------PTQGTT---TSGMDDDEDDLEGLL-AEIEDEHQKMQGRRSEFNGYSYKEL--- 627
                        ..||.|   ..|......|..|.: .....|.|:......||      ||   
Zfish   527 GFGRGRGRFGGFNRQGDTCYKCGGTGHWAQDCRGKVPVNTSAEQQETPVEEEEF------ELPTL 585

  Fly   628 -EAVKVKEKHKETPINISLDDDGFPEYDEAMFEQMHSQAAANKSRVSSAGPSTSKSVVPTKQTSA 691
             |..:.....:..||......||    |.:..|:..::...|..|.....|:      |......
Zfish   586 EEVARATGTLRSEPIVAPPSADG----DSSEKEEQGAEILLNIIRPDYERPA------PPPPMEP 640

  Fly   692 LHSQKLSGNFHANVHNDGITGEFDGQKFEHSTRLMHGLSYSFGLKSFRPNQLQVINATLLGNDCF 756
            |:..|          :||...:...:.:| :.|       .||.|||||.|...|...|.|....
Zfish   641 LYKLK----------DDGKVQDVPPEVYE-ALR-------DFGYKSFRPGQEAAIMRILSGLSTL 687

  Fly   757 VLMPTGGGKSLCYQLPAIL----TEGVTIVISPLKSLIFDQIN----KLASLDICAKS-LSGEQK 812
            |::.||.||||||||||.|    ::.:|:|:|||.||:.||::    ||.:  .|..| :|.:|:
Zfish   688 VVLSTGMGKSLCYQLPAYLYAQRSKSITLVVSPLVSLMDDQLSGLPPKLKA--ACIHSNMSAKQR 750

  Fly   813 MADVMAIYRDLESQPPMVKLLYVTPEKI----SSSARFQDTLDTLNSNNYISRFVIDEAHCVSQW 873
            .|.:..:      :...|.:|.::||.:    .|.:......|.|..   ::...||||||||:|
Zfish   751 EAAIEKV------KAGQVHVLLLSPEALVGGGHSGSGCLPPADQLPP---VAFACIDEAHCVSEW 806

  Fly   874 GHDFRPDYKKL-GVLKKRFPNVPTIALTATATPRVRLDILAQLNLKNCKWFLSSFNRSNLRYRVL 937
            .|:|||.|.:| .||:.|......:.||||||....|||...|:       :|..:...:|...:
Zfish   807 SHNFRPCYLRLCKVLRDRLGVRCLLGLTATATLSTALDIARHLD-------ISDEDGIAVRSAAV 864

  Fly   938 P---KKGVSTLDDISRYIRS--KPQHF----SGIIYCLSRKECDETSK-----KMCKDGVR---- 984
            |   :..||...|..:.:.|  |.:.|    |.|:||..|   :|||:     :.|..||.    
Zfish   865 PHNLQLSVSMDRDKDQALVSLLKGERFGALDSVIVYCTRR---EETSRIAALLRTCLQGVMLRES 926

  Fly   985 ---------------------------------AVSYHAGLTDTDRESRQKDWLTGKMRVICATV 1016
                                             |.:|||||:.::|...|.:::.|::||:.|||
Zfish   927 SKHTALQEDDDNPVGKKKKALARKKIRKPLKWIAEAYHAGLSASERRRVQNNFMCGELRVVVATV 991

  Fly  1017 AFGMGIDKPDVRFVLHYSLPKSIEGYYQEAGRAGRDGDVADCILYYN--YSDMLRIKKMLDSDKA 1079
            |||||:||.|||.::||::|||.|.|.||.|||||||..|.|.|:.:  ..|:..:::.:.:|..
Zfish   992 AFGMGLDKSDVRGIIHYNMPKSFESYVQEIGRAGRDGHPAHCHLFLDPEGGDLHELRRHIYADTV 1056

  Fly  1080 LQYNVKKIHVDNLYRIVGYCENLTDCRRAQQ---------------------LDYFGEH------ 1117
            ..|.|||:    :.::...|:    ||:.||                     .|....|      
Zfish  1057 DYYTVKKL----VQKVFPPCK----CRQIQQKQQDLAQAAEVSDSELLEMELCDDSDPHQNEIPT 1113

  Fly  1118 FTSEQC--------LENRETACDNCINKRAY---------KAVDALEHARKAARAVKDLCSGRSR 1165
            .|.:|.        .|.|....|.|:.:..:         :.|:||:...::...:  ||     
Zfish  1114 LTHQQTPQTHTPEETEERPQLSDECVQRFCHTHERAIPMQETVEALDITEESLETL--LC----- 1171

  Fly  1166 FTLLH---IADVLKGSKIKKIIDFNHHKTPHHGVLKDWDKNDVHRLLRKMVIDGFLREDLIFTND 1227
            :..||   ..::|             |.|.....|:.:......|.:.|:..             
Zfish  1172 YLELHPQQWVELL-------------HPTLSVCKLQCYGGPQQLRKIAKLCA------------- 1210

  Fly  1228 FPQAYLYLGNNIS-KLMEGTPNFEFAVTKNAKE-------AKAAVGSVSDGATSST--ADGQSGM 1282
             |.|.:.....:: :.::.....||.|.:.|..       .|..:..:..|:.:.:  ..|:||:
Zfish  1211 -PVAVVLARRRMAGERVQSCDALEFDVVELADTMGWQLPLVKRGLRQLQWGSDTGSYGGTGRSGV 1274

  Fly  1283 R------EIHERCYTDL----LD-LCR----TIASQRNVTMASIMN-IQALKSMA---------- 1321
            .      ..:.|.|.||    || :|.    .:.:|.|..:..:.. .:|.:|:|          
Zfish  1275 HVEFSALSFYFRSYGDLTADELDAVCAFLHGRVKTQENTQLYQLKTCFRAFRSVAYRNCSLCLDD 1339

  Fly  1322 --ETLPITEKDMCSIPHVTKANFDKYGAKLLEITSNYASEKLLMQAVLDEEEEQAAAKQRPSTSG 1384
              |:.....||:.|      ..|||  .:.||::      |..::...|||||....|.|     
Zfish  1340 LEESRSQALKDLLS------DYFDK--RRNLELS------KQCLEDEHDEEEELNKCKMR----- 1385

  Fly  1385 WNNESVDWDMAVAS 1398
                  ||:..:.:
Zfish  1386 ------DWETQICA 1393

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
BlmNP_524319.2 RQC 1140..1253 CDD:286470 17/125 (14%)
HRDC 1286..1352 CDD:278967 20/87 (23%)
RecQ 729..1359 CDD:223588 203/781 (26%)
DEAD 739..908 CDD:278688 67/182 (37%)
HELICc 931..1061 CDD:238034 61/180 (34%)
RecQ_Zn_bind 1066..1134 CDD:292742 18/102 (18%)
recql4XP_001920631.5 Drc1-Sld2 5..>186 CDD:314562 41/207 (20%)
PLN02341 289..>460 CDD:333273 46/201 (23%)
ZnF_C2HC 544..559 CDD:197667 3/14 (21%)
RecQ 664..>1040 CDD:223588 139/396 (35%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D445763at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
21.920

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