DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Blm and RecQ5

DIOPT Version :9

Sequence 1:NP_524319.2 Gene:Blm / 41366 FlyBaseID:FBgn0002906 Length:1487 Species:Drosophila melanogaster
Sequence 2:NP_729983.1 Gene:RecQ5 / 39594 FlyBaseID:FBgn0027375 Length:1058 Species:Drosophila melanogaster


Alignment Length:884 Identity:250/884 - (28%)
Similarity:386/884 - (43%) Gaps:189/884 - (21%)


- Green bases have known domain annotations that are detailed below.


  Fly   721 HSTRLMHGLSYSFGLKSFRPNQLQ---VINATLLGNDCFVLMPTGGGKSLCYQLPAILTEG-VTI 781
            |.:.:...|...||...|: :.||   |..|.....|.:|.||||.|||||:|||.:::|. :||
  Fly     3 HESAVHEALKKHFGHSKFK-SDLQEKAVKCAVKKKQDVYVSMPTGSGKSLCFQLPGLMSENQITI 66

  Fly   782 VISPLKSLIFDQINKLASLDICAKSLSGEQKMADVMAIYRDLESQPPMVKLLYVTPEKISSSARF 846
            |.|||.:||.|||:.|..|.:.|.||:.:....:...:..||::....:|.||:|||: :::..|
  Fly    67 VFSPLLALIKDQIDHLTKLKVPADSLNSKMSTKERDRVIMDLKAVRTNLKFLYITPEQ-AATKFF 130

  Fly   847 QDTLDTLNSNNYISRFVIDEAHCVSQWGHDFRPDYKKLGVLKKRFPNVPTIALTATATPRVRLDI 911
            ||.|.||:.:|.::.|.:|||||||||||||||||.|||.|:.::.:|..:||||||:..|:.||
  Fly   131 QDLLQTLHKHNKLAYFAVDEAHCVSQWGHDFRPDYLKLGELRSKYSDVIWLALTATASREVKEDI 195

  Fly   912 LAQLNLKN--CKWFLSSFNRSNLRYRVLPKKGVST----LDDISRYIRSKPQHFS---------G 961
            ..||.|..  .::...|| |.||.|.::.|..:..    |.|.:|:....|:.|.         |
  Fly   196 YKQLRLHQPVAQFSTPSF-RKNLFYDIVYKNSIEDDFQHLADFARHCLGNPKEFKDTPKPQRGCG 259

  Fly   962 IIYCLSRKECDETSKKMCKDGVRAVSYHAGLTDTDRESRQKDWLTGKMRVICATVAFGMGIDKPD 1026
            |:||.:|.:.:..:..:.|.|:.||:|||||...:|...|:.|:.|...:||||.:||||:|||.
  Fly   260 IVYCRTRDQVERMAIGVTKQGIGAVAYHAGLKTGERTEVQEAWMRGDQPIICATNSFGMGVDKPS 324

  Fly  1027 VRFVLHYSLPKSIEGYYQEAGRAGRDGDVADCILYYNYSDMLRIKKMLDSD--KALQYNVKKI-- 1087
            ||||:|:.:|:::..||||:|||||||..:.|.|||...|:..|:.:|.:|  :|.....|::  
  Fly   325 VRFVIHWDVPQNVAAYYQESGRAGRDGLQSYCRLYYGREDVRSIRFLLQNDAHRARGRGDKELLT 389

  Fly  1088 --HVDNLYRIVGYCENLTDCRRAQQLDYFGEHFTSEQCLENRETACDNCINKRAYKAVDALEHAR 1150
              .:....:|..:||. |.||.....|:||:  .:..|    ...||.|  ||..||..|||...
  Fly   390 ERAIKQFEKITEFCER-TTCRHKLFSDFFGD--PTPDC----SGQCDVC--KRPKKAEKALEIFH 445

  Fly  1151 KAARAVKDLC---SGRSRFTLLHIADVLKGSK--IKKIIDFNHHKTPHHGVLKDWDKNDVHRLLR 1210
            :       ||   :.:|..:|...||:.:|.:  ||:..  ..:.....|  .|.|....|..:.
  Fly   446 R-------LCMDDAFKSHISLQDCADLYEGGRPGIKRAA--QEYAGGESG--SDDDSGQSHSSMA 499

  Fly  1211 KMVIDGFLREDLIFTNDFPQAYLYLGNNISKLMEGTPNFEFAVTKNAKEAKAAVGSVSDGATSST 1275
            |..     :::   :.||.:....|...||           |..:..:|..|.:..|.  ...:|
  Fly   500 KRA-----KKE---SQDFIKQQFNLRKQIS-----------AARQLEQETIAQISRVR--MAEAT 543

  Fly  1276 ADGQSGMREIHERCYTDLL--------DLCRTIASQ----------------------------- 1303
            ....:|::..|...|...|        |.|:....|                             
  Fly   544 EKKIAGLQATHREKYLTALIDALKANVDKCKDEPGQQPKSVLKYNDYEAMSVNMEYDVFRQNKVA 608

  Fly  1304 ---RNVTMASIMNIQALKSMAETLP-------------------------------ITEKDMCSI 1334
               |:..:..|..|:.|....:.||                               :.|:...|:
  Fly   609 NMYRHALVKEISTIKKLTEQTKLLPLLVDYIPKPETSSKGAWTGGSVAYFERKLKELEEQRPQSL 673

  Fly  1335 PHVTKANFDKYG-----AKLLEITSNYASEKLLMQAVLDE--EEEQAAAKQRPSTSGWNNESVDW 1392
            ..|.||..|:.|     :|...|:|.:..|  :.:..:|.  :||:...|......   .||...
  Fly   674 KEVPKALKDRKGFKQENSKQTSISSFFKKE--IKEEPIDSPIQEERVNIKSEQMDL---EESTPK 733

  Fly  1393 DMA---VASQGNANTSGAS----------------------GFNSFRAGKRKKIYKSGASKRYKT 1432
            |:|   |..:.....|.:|                      |..|:...:||::       .::|
  Fly   734 DIASNHVKEESVTPESSSSDRELELQPDSIIGERKFKLMSNGDGSYDTHRRKRV-------SHET 791

  Fly  1433 STTSPAARKTTSARGRGGRAGAKRAESSASSASGWKSKK 1471
            ......:.||.|:......:....:|.|..|.:|:|:.:
  Fly   792 QPKEKESIKTKSSMQHLFGSFKSESEESNQSLNGFKTAR 830

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
BlmNP_524319.2 RQC 1140..1253 CDD:286470 24/117 (21%)
HRDC 1286..1352 CDD:278967 20/141 (14%)
RecQ 729..1359 CDD:223588 224/735 (30%)
DEAD 739..908 CDD:278688 79/172 (46%)
HELICc 931..1061 CDD:238034 56/142 (39%)
RecQ_Zn_bind 1066..1134 CDD:292742 18/73 (25%)
RecQ5NP_729983.1 RecQ 6..>442 CDD:223588 175/447 (39%)
DEAD 37..193 CDD:278688 76/156 (49%)
HELICc <257..359 CDD:238034 47/101 (47%)
RecQ_Zn_bind 364..431 CDD:292742 18/73 (25%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C45457826
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG0514
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D445763at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - P PTHR13710
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R580
SonicParanoid 00.000 Not matched by this tool.
65.880

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