DRSC/TRiP Functional Genomics Resources

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Protein Alignment scpr-A and crispld2

DIOPT Version :9

Sequence 1:NP_650062.1 Gene:scpr-A / 41358 FlyBaseID:FBgn0037889 Length:264 Species:Drosophila melanogaster
Sequence 2:XP_003199065.1 Gene:crispld2 / 100535149 ZFINID:ZDB-GENE-130131-1 Length:508 Species:Danio rerio


Alignment Length:210 Identity:52/210 - (24%)
Similarity:76/210 - (36%) Gaps:42/210 - (20%)


- Green bases have known domain annotations that are detailed below.


  Fly    62 ILNLFNELRNNVAGGKIEGLPKAVRMAKMSWCEELSHLALLNVKTCESLPDKCR----STERFAY 122
            ||.|.|:||..|       .|.|..|..|.|.:||.       ::..|..::|:    ..:....
Zfish    64 ILKLHNKLRGEV-------YPTASNMEYMIWDDELE-------RSATSWAEQCQWEHGPQDLLMS 114

  Fly   123 AGQNNALFQYSGAETEYTDAEIIKEEIENWFAE-RSNASP---EILASFPEELPNKAVTKFTIAV 183
            .|||.|:.........|        .::.|:.| :....|   |.....||.......|.:|..|
Zfish   115 IGQNLAVHWGRYRSPAY--------HVQAWYDEVKDYTYPYPHECNPWCPERCSGPMCTHYTQLV 171

  Fly   184 AEKNTHVGCAAVRFSR------DFYNHFVLTCNFA-TSNIVGQPVYTPGEKATTGCKNRYGAAYD 241
            ......||||.....|      .:.|...|.||:: ..|.:|:..|..| :..:.|...||... 
Zfish   172 WATTNRVGCAVHVCPRMNVWGEIWENAVYLVCNYSPKGNWIGEAPYQHG-RPCSQCPPSYGGVC- 234

  Fly   242 YPNLCYAKEIYDNEK 256
            ..||||.:   |:|:
Zfish   235 RDNLCYKR---DSER 246

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
scpr-ANP_650062.1 SCP_euk 60..212 CDD:240180 39/163 (24%)
crispld2XP_003199065.1 SCP_euk 61..206 CDD:240180 39/163 (24%)
LCCL 299..382 CDD:128866
LCCL 402..495 CDD:281766
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C170585806
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG2340
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1528782at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR10334
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
54.850

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