DRSC - DRSC Integrative Ortholog Prediction Tool

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits

Protein Alignment scpr-A and crispld1a

DIOPT Version :9

Sequence 1:	NP_650062.1	Gene:	scpr-A / 41358	FlyBaseID:	FBgn0037889	Length:	264	Species:	Drosophila melanogaster
Sequence 2:	XP_001920421.2	Gene:	crispld1a / 100149104	ZFINID:	ZDB-GENE-090612-1	Length:	508	Species:	Danio rerio

Alignment Length:	222	Identity:	53/222 - (23%)
Similarity:	78/222 - (35%)	Gaps:	53/222 - (23%)

- Green bases have known domain annotations that are detailed below.

  Fly    62 ILNLFNELRNNVAGGKIEGLPKAVRMAKMSWCEELSHLALLNVKTC-------ESLPDKCRSTER 119
            ||:|.|:||..|       .|.|..|..|.|..||...|....:||       ..||.
Zfish    70 ILDLHNKLRGQV-------YPPASNMEYMVWDNELERSAEEWAETCLWEHGPAGLLPQ------- 120

  Fly   120 FAYAGQNNALFQYSGAETEYTDAEIIKEEIENWFAERSNASPEILASFPEE--------LPNKAV 176
               .|||  |..:.|.....|      ..::.|:.|..:.|    ..:|:|        ......
Zfish   121 ---IGQN--LGVHWGRYRPPT------SHVQAWYDEVKDYS----FPYPQECNPHCPFRCSGPVC 170

  Fly   177 TKFTIAVAEKNTHVGCAA-VRFSRDFYNHF-----VLTCNFA-TSNIVGQPVYTPGEKATTGCKN 234
            |.:|..|...::.:|||. |.::.:.:...     .|.||:: ..|..|...|..| .:.:.|..
Zfish   171 THYTQLVWATSSRIGCAINVCYNMNVWGQIWAKAVYLVCNYSPKGNWWGYAPYKHG-TSCSACPP 234

  Fly   235 RYGAAYDYPNLCYAKEIYDNEKVIENT 261
            .||... ..||||..:..:.:...|.|
Zfish   235 SYGGVC-RENLCYKGDGKNRQSPSEET 260

Known Domains:

Indicated by green bases in alignment.

Gene	Sequence	Domain	Region	External ID	Identity
scpr-A	NP_650062.1	SCP_euk	60..212	CDD:240180	40/170 (24%)
crispld1a	XP_001920421.2	SCP_euk	68..212	CDD:240180	40/170 (24%)
		LCCL	298..381	CDD:128866
		LCCL	401..500	CDD:281766
Blue background indicates that the domain is not in the aligned region.

Information from Original Tools:

Tool	Simple Score	Weighted Score	Original Tool Information
Tool	Simple Score	Weighted Score	BLAST Result	Score	Score Type	Cluster ID
Compara	1	0.930	-	-		C170585680
Domainoid	0	0.000	Not matched by this tool.
eggNOG	1	0.900	-	-		E1_COG2340
Hieranoid	0	0.000	Not matched by this tool.
Homologene	0	0.000	Not matched by this tool.
Inparanoid	0	0.000	Not matched by this tool.
OMA	0	0.000	Not matched by this tool.
OrthoDB	1	1.010	-	-		D1528782at2759
OrthoFinder	0	0.000	Not matched by this tool.
OrthoInspector	0	0.000	Not matched by this tool.
orthoMCL	0	0.000	Not matched by this tool.
Panther	1	1.100	-	-	O	PTHR10334
Phylome	1	0.910	-	-
RoundUp	0	0.000	Not matched by this tool.
SonicParanoid	0	0.000	Not matched by this tool.
SwiftOrtho	0	0.000	Not matched by this tool.
TreeFam	0	0.000	Not matched by this tool.
ZFIN	0	0.000	Not matched by this tool.
	5	4.850