DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment GCC88 and ATGRIP

DIOPT Version :9

Sequence 1:NP_650055.1 Gene:GCC88 / 41350 FlyBaseID:FBgn0037881 Length:695 Species:Drosophila melanogaster
Sequence 2:NP_851277.1 Gene:ATGRIP / 836733 AraportID:AT5G66030 Length:788 Species:Arabidopsis thaliana


Alignment Length:826 Identity:176/826 - (21%)
Similarity:335/826 - (40%) Gaps:213/826 - (25%)


- Green bases have known domain annotations that are detailed below.


  Fly     6 RELEALVSTQKEQLGRYEKRLKD------------VVTAYKGLLKEKEALETSLAAHAEATAVGE 58
            :|.:.:...::..:.:.:|.|.|            ::.....|..|.:.|.:......:..|.|.
plant     5 KESDVVGEEEESHVIKEDKELNDASNETLTENGDQLLQMIAELRLENDFLRSQFEGLKDEVAQGR 69

  Fly    59 SGSPARELESKKTSTDSADGATEGAAPGPPAPPAEGQLQTQIITLMNSL-----ATLSAEKS--- 115
            |...|.::|:     |||.               ..|||.|:.:|...:     ..::||::   
plant    70 SLQKAEQVEA-----DSAQ---------------LKQLQEQVASLSREIDVEKQTRVAAEQALEH 114

  Fly   116 RMEASFQADKK--QLRSQIAQKEQTI-QELNTRAKEQA----------ARAKSDVDEIKAKWIVE 167
            ..||..:||.|  :..|:.:|.||.: ||:..|.::.|          .|||..:.||       
plant   115 LREAYSEADAKSQEYSSKFSQVEQKLDQEIKERDEKYADLDAKFTRLHKRAKQRIQEI------- 172

  Fly   168 RQEREKETNNQMLMIRELQKLYADERHLKDNIEMQLNNFKTQFASNE------AENSRLR----E 222
                :||.::.....||:.:  ..||....:..||....:|:..:||      ||..:||    :
plant   173 ----QKEKDDLDARFREVNE--TAERASSQHSSMQQELERTRQQANEALKAMDAERQQLRSANNK 231

  Fly   223 LQSQLKEARSQLKQFQAKTEHSAAASASADSAALLQQVRLEMQQLKEQHAVAIRQ----EQRRVL 283
            |:..::|.|..|:..:.|.|  ....:..|...:|:.::.::|.::|:..:|:.:    .|:.:.
plant   232 LRDTIEELRGSLQPKENKIE--TLQQSLLDKDQILEDLKKQLQAVEERKQIAVTELSAKHQKNLE 294

  Fly   284 RAEEQ-----SRRQAALHEDRVASLEARLAELSTTV--------GSYDRLRQQDQDSIHDLKQQL 335
            ..|.|     |.|..|  .:.::||:..|||..:.:        |...|||.    :...||.:|
plant   295 GLEAQVVDALSERDKA--AETISSLQVLLAEKESKIAEMEAAATGEAARLRA----AAETLKGEL 353

  Fly   336 QDLEQAHVR----------------PTSNSRALNEDVDVA----TLVDEMVRLKKLLTTANARSA 380
            ..|:..:.:                ..:.|..|..:::||    .|..||....::|:|.:|...
plant   354 AHLKSENEKEKETWEASCDALKSKLEIAESNYLQAEIEVAKMRSQLGSEMSMQTQILSTKDAELK 418

  Fly   381 NPLDLGEILSFSGQ-TATRVESHAHCEQQLQGVQQMLEASKQQRQL--LEQKVQLQHSHI----- 437
            ...:  ||.....: ::.::.:||    .||.....|.|:|...|:  ||:.::.....:     
plant   419 GARE--EINRLQSEFSSYKIRAHA----LLQKKDMELAAAKDSEQIKSLEEALKEAEKEVYLVSA 477

  Fly   438 ------QTLQEKVQVLNRNIDEAEVELKQQGEKLR-LALK---------NERTKWQEAKAELENE 486
                  |.||..:..|.:.::|....||...|::: |.:|         .|:..|:|....|| |
plant   478 ERDRAQQDLQSALASLEKELEERAGALKDASEQIKSLEVKLDSTVARNQAEKQAWEEDLRVLE-E 541

  Fly   487 T---RCKL--------------NELE--QLLQKQ--------RQRSLQLLDEKEQEIK------- 517
            |   ||:.              .|||  :|..|:        |:.:.:|::||::||.       
plant   542 TWRRRCEALTAQNEASPAEGIEKELENAKLRNKRMKEEHESVRELADRLIEEKDREISRLVDEMT 606

  Fly   518 TLQTSFEVFHSASGVGSTLATPTLEAAADSFHYSSDTDSVEGEQRERKLKVRSKKMSMGENCHML 582
            .|:.|.|            :.|....:....|:..: ::.|.:|::    |.:...|..|: .:|
plant   607 NLRKSME------------SKPVWNKSPSQVHHYGN-NNTESQQQD----VSNLSTSAAEH-QIL 653

  Fly   583 HYANELARKDIEITTLRKAKYAAESTLRK-AIQDKVTSQQEMHEKIECLKEQVDRLERCKTREGA 646
            ..|.:.|:::.|:...::...|.:..:.: ..::::.||||     ..||.::..:||.:.|||.
plant   654 ILARQQAQREEELAQTQRHILALQEEIEELERENRLHSQQE-----AVLKTELREMERKQKREGV 713

  Fly   647 NLEYLKNVIISYIVTRDADGKRHMLNAISAVLQFTAAEMQAINASF 692
            ::.||||||:..:.|.:.:.   :|..:..:|||:..|:|....::
plant   714 DMTYLKNVILKLLETGEVEA---LLPVVGMLLQFSPEEIQKCQQAY 756

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
GCC88NP_650055.1 GRIP 646..688 CDD:279767 13/41 (32%)
ATGRIPNP_851277.1 TMPIT 166..>257 CDD:285135 24/105 (23%)
Grip 712..755 CDD:197860 14/45 (31%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 82 1.000 Inparanoid score I2362
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0006884
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
33.050

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