DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment GCC88 and gcc-1

DIOPT Version :10

Sequence 1:NP_650055.1 Gene:GCC88 / 41350 FlyBaseID:FBgn0037881 Length:695 Species:Drosophila melanogaster
Sequence 2:NP_508543.2 Gene:gcc-1 / 180606 WormBaseID:WBGene00002220 Length:594 Species:Caenorhabditis elegans


Alignment Length:44 Identity:13/44 - (29%)
Similarity:21/44 - (47%) Gaps:9/44 - (20%)


- Green bases have known domain annotations that are detailed below.


  Fly     5 PQLI--SAMLSIDNIDDNIYRSEGPHI-----GGIFGVNRLFGG 41
            |:::  |.:.:|.::..|..|...||:     |.|.|  |..||
 Worm   595 PEILIHSPIPNIKSVSPNGKRVSPPHMESSSSGSILG--RRNGG 636

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
GCC88NP_650055.1 Smc <33..>341 CDD:440809 4/9 (44%)
SMC_prok_B 219..>527 CDD:274008
GRIP 645..688 CDD:460221
gcc-1NP_508543.2 PRK03918 <124..>436 CDD:235175
Grip 546..594 CDD:197860
Blue background indicates that the domain is not in the aligned region.

Return to query results.
Submit another query.