DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment GCC88 and Gcc1

DIOPT Version :9

Sequence 1:NP_650055.1 Gene:GCC88 / 41350 FlyBaseID:FBgn0037881 Length:695 Species:Drosophila melanogaster
Sequence 2:XP_006236296.1 Gene:Gcc1 / 100361513 RGDID:2319954 Length:778 Species:Rattus norvegicus


Alignment Length:791 Identity:225/791 - (28%)
Similarity:391/791 - (49%) Gaps:148/791 - (18%)


- Green bases have known domain annotations that are detailed below.


  Fly     5 QRELEALVSTQKEQLGRYEKRLKDVVTAYKGLLKEKEALETSL---------------------- 47
            :::|...:.|||:||.:|:.||||||.|||.|||||||||.|:                      
  Rat    14 KKDLLETIETQKKQLLQYQARLKDVVRAYKSLLKEKEALEASIKVLSVSHEADAGLSGVQPPGLT 78

  Fly    48 ---------AAHAE-ATAVGESGSPARELESKK----------------TSTDSADGATEGAAPG 86
                     :.|:| :|....|...|..|.|.|                ..::.|.|:..|.:..
  Rat    79 FPDSVDDRCSTHSEDSTGTATSLDTAASLTSVKGEFGVEDDRVARGPLPPKSEEASGSESGVSSS 143

  Fly    87 PPAPPAEG--------QLQTQIITLMNSLATLSAEKSRMEASFQADKKQLRSQIAQKEQTIQELN 143
            ....|:.|        ||:||:.||.:||||::.||||||||:.||||:::       |.:::.|
  Rat   144 SGDGPSAGSEIDKRVHQLKTQLATLTSSLATVTQEKSRMEASYLADKKKMK-------QDLEDAN 201

  Fly   144 TRAKEQAARAKSD-------VDEIKAKWIVERQEREKETNNQMLMIRELQKLYADERHLKDNIEM 201
            .:|:|:..|.:.|       :.|.||:.|.::.:|.:|.::..||:||||||..:||..:.::|:
  Rat   202 KKAEEERGRLEGDLKGLQEQIAETKARLITQQHDRAQEQSDHALMLRELQKLLQEERTQRQDLEL 266

  Fly   202 QLNNFKTQFASNEAENSRLRELQSQLKEARSQLKQFQAKTEHSAAASASADSAALLQQVRLEMQQ 266
            :|...:...|.......:|...:.|.|:...::::.  |.|..|...........||:::.|..:
  Rat   267 RLEETREALAGRAYAADQLEGFELQTKQLTREVEEL--KGELQAIREEKNRPDPRLQELQQEAAR 329

  Fly   267 LKEQHAVAIRQEQRRVLRAEEQSRRQAALHEDRVASLEARLAELSTTVGSYDRLRQQDQDSIHDL 331
            ||......::||.|:...||:|.|:|:.:.|.|||:||.:::|:|..:|:|::.:|:||.:|..|
  Rat   330 LKSHFQAQLQQEMRKTALAEDQLRQQSQVEEQRVAALENQISEVSELLGTYEKAKQKDQLAIQKL 394

  Fly   332 KQQL--QDLEQ------AHVRPTSNSRALNEDVDVATLVDEMVRLKKLLTTANARSANPLDLGEI 388
            |.::  .|||.      |..||:.:.......:|:..|.|:|.:||:||..|..:|...||:.::
  Rat   395 KDRILQLDLENKTLALAASSRPSLDIHGDESSLDINVLKDKMEKLKRLLQVAARKSQVTLDVEKL 459

  Fly   389 L---------SFSGQTATRVESHAHCEQQLQGVQQMLEASKQQRQL-----------LEQKVQLQ 433
            .         :..|:.||.:    :.:|:|:.:::..|..|.:.|:           |.::::..
  Rat   460 CDPDIMANSEAADGEKATAL----YYQQELKQLKEEFERYKMRAQVVLKSKNTKDGNLGKELEAA 520

  Fly   434 HSHIQTLQEKVQVLNRNIDEAEVELKQQGEKLRLALKNERTKWQEA-KAELEN---ETRCKLNEL 494
            ...:..|::|...|..:.:|.|.:.:|:.|.    .|.|.|:.|:. :.|||.   :.|.:..:|
  Rat   521 QEQLAELKDKYISLRLSCEELENQHQQEAED----WKQELTRLQQLHQQELERSQLDFRDRTMKL 581

  Fly   495 EQLLQKQRQRSLQLLDEKEQEIKTLQTSFEVFHSASGV-----------GSTLATPTLEAAADSF 548
            |:.|.|||.|:|.:|.||:.|::.|::    ...:||:           |..|..|...|::||.
  Rat   582 EEELHKQRDRALAVLAEKDLELEQLRS----VALSSGLPGRRSPVGGVGGGGLGDPDDPASSDSL 642

  Fly   549 HYSSDTDSVEGEQRERKLKVRSKKMSMGENCHMLHYANELARKDIEITTLRKAKYAAESTLRKAI 613
                               .::.:::.........||.:||||::|||:|||.|:..|....: :
  Rat   643 -------------------TQALQLAAANEPTFFLYAEQLARKEVEITSLRKQKHRLEVEAHQ-L 687

  Fly   614 QDKVTSQQEMH-EKIECLKEQVDRLERCKTREGANLEYLKNVIISYIVTRDADGKRHMLNAISAV 677
            |:::..:.|.| |::..|:..:::..|.::|||||||||||:|..::...|:.|::..|.||..:
  Rat   688 QERLLEEGERHREEVGALQSHIEKNIRDQSREGANLEYLKNIIYRFLTLPDSLGRQQTLTAILTI 752

  Fly   678 LQFTAAEMQAI 688
            |.|:..|.|.:
  Rat   753 LHFSPEEKQVL 763

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
GCC88NP_650055.1 GRIP 646..688 CDD:279767 18/41 (44%)
Gcc1XP_006236296.1 PRK03918 <153..>608 CDD:235175 137/471 (29%)
GRIP 721..763 CDD:396170 18/41 (44%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C166341660
Domainoid 1 1.000 241 1.000 Domainoid score I2180
eggNOG 1 0.900 - - E1_28HRG
Hieranoid 1 1.000 - -
Homologene 1 1.000 - - H11567
Inparanoid 1 1.050 279 1.000 Inparanoid score I2846
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D415424at33208
OrthoFinder 1 1.000 - - FOG0006884
OrthoInspector 1 1.000 - - oto95864
orthoMCL 1 0.900 - - OOG6_107068
Panther 1 1.100 - - LDO PTHR23157
Phylome 1 0.910 - -
SonicParanoid 1 1.000 - - X5782
SwiftOrtho 1 1.000 - -
TreeFam 1 0.960 - -
1514.760

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