DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment scpr-C and scl-9

DIOPT Version :9

Sequence 1:NP_001287282.1 Gene:scpr-C / 41348 FlyBaseID:FBgn0037879 Length:262 Species:Drosophila melanogaster
Sequence 2:NP_502497.1 Gene:scl-9 / 186048 WormBaseID:WBGene00009890 Length:213 Species:Caenorhabditis elegans


Alignment Length:208 Identity:51/208 - (24%)
Similarity:80/208 - (38%) Gaps:71/208 - (34%)


- Green bases have known domain annotations that are detailed below.


  Fly    60 ILNLFNELRNNVAGGKI--EGL--PKAVRMAKMSWCEELSHLALLNVKTCESLPDKCRSTERFAY 120
            :||:.||.|:.:|.|::  .|:  |.|..|.|:||.::|::.|....:||.              
 Worm    28 LLNVHNEFRSQLALGQLSFRGVKKPSASMMRKISWSKKLTNAATKFAETCP-------------- 78

  Fly   121 AGQNNAVFQYSGAETEYTDAEIIKEQIENWFAERSNASPEILASF-PEE-------------LPN 171
              :|::|...:|            |.| .|....|.::||..|:. |::             :.|
 Worm    79 --KNHSVVMNTG------------ESI-FWHFSSSLSTPEQYATLAPQKWWNEFETNGWDSLIYN 128

  Fly   172 KAVTKFTIAVA-----EKNTHVGCAAVRFSRDFYNH---------FVLTCN-FATSNIVGQPVYT 221
            .|..:|.|..|     ...:.|||.        |:.         .|:.|. |...||.|:|:|.
 Worm   129 HASQRFQIGHAVQMAWHTTSKVGCG--------YSKCAVGTPEQTMVVVCRYFQKGNIEGEPIYN 185

  Fly   222 PGEKATTGCKNRY 234
            .||..|. |...|
 Worm   186 EGETCTK-CPEEY 197

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
scpr-CNP_001287282.1 SCP_euk 58..210 CDD:240180 40/182 (22%)
scl-9NP_502497.1 SCP 23..174 CDD:214553 40/182 (22%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 41 1.000 Domainoid score I8510
eggNOG 1 0.900 - - E1_COG2340
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 71 1.000 Inparanoid score I3895
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1528782at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR10334
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
65.970

Return to query results.
Submit another query.