DRSC/TRiP Functional Genomics Resources

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Protein Alignment scpr-C and crispld1a

DIOPT Version :9

Sequence 1:NP_001287282.1 Gene:scpr-C / 41348 FlyBaseID:FBgn0037879 Length:262 Species:Drosophila melanogaster
Sequence 2:XP_001920421.2 Gene:crispld1a / 100149104 ZFINID:ZDB-GENE-090612-1 Length:508 Species:Danio rerio


Alignment Length:222 Identity:53/222 - (23%)
Similarity:78/222 - (35%) Gaps:53/222 - (23%)


- Green bases have known domain annotations that are detailed below.


  Fly    60 ILNLFNELRNNVAGGKIEGLPKAVRMAKMSWCEELSHLALLNVKTC-------ESLPDKCRSTER 117
            ||:|.|:||..|       .|.|..|..|.|..||...|....:||       ..||.       
Zfish    70 ILDLHNKLRGQV-------YPPASNMEYMVWDNELERSAEEWAETCLWEHGPAGLLPQ------- 120

  Fly   118 FAYAGQNNAVFQYSGAETEYTDAEIIKEQIENWFAERSNASPEILASFPEE--------LPNKAV 174
               .|||..|  :.|.....|      ..::.|:.|..:.|    ..:|:|        ......
Zfish   121 ---IGQNLGV--HWGRYRPPT------SHVQAWYDEVKDYS----FPYPQECNPHCPFRCSGPVC 170

  Fly   175 TKFTIAVAEKNTHVGCAA-VRFSRDFYNHF-----VLTCNFA-TSNIVGQPVYTPGEKATTGCKN 232
            |.:|..|...::.:|||. |.::.:.:...     .|.||:: ..|..|...|..| .:.:.|..
Zfish   171 THYTQLVWATSSRIGCAINVCYNMNVWGQIWAKAVYLVCNYSPKGNWWGYAPYKHG-TSCSACPP 234

  Fly   233 RYGAAYDYPNLCYAKEIYDNEKVIENT 259
            .||... ..||||..:..:.:...|.|
Zfish   235 SYGGVC-RENLCYKGDGKNRQSPSEET 260

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
scpr-CNP_001287282.1 SCP_euk 58..210 CDD:240180 40/170 (24%)
crispld1aXP_001920421.2 SCP_euk 68..212 CDD:240180 40/170 (24%)
LCCL 298..381 CDD:128866
LCCL 401..500 CDD:281766
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C170585685
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG2340
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1528782at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR10334
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
54.850

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