DRSC/TRiP Functional Genomics Resources

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Protein Alignment RpL3 and RP1

DIOPT Version :9

Sequence 1:NP_524316.1 Gene:RpL3 / 41347 FlyBaseID:FBgn0020910 Length:416 Species:Drosophila melanogaster
Sequence 2:NP_001031146.1 Gene:RP1 / 840916 AraportID:AT1G43170 Length:389 Species:Arabidopsis thaliana


Alignment Length:398 Identity:254/398 - (63%)
Similarity:308/398 - (77%) Gaps:13/398 - (3%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MSHRKFSAPRHGSMAFYPKKRSARHRGKVKAFPKDDASKPVHLTCFIGYKAGMTHIVREADRPGS 65
            ||||||..|||||:.|.|:||:.|||||||||||||.:||...|.|:||||||||||||.::|||
plant     1 MSHRKFEHPRHGSLGFLPRKRANRHRGKVKAFPKDDQTKPCKFTAFMGYKAGMTHIVREVEKPGS 65

  Fly    66 KINKKEVVEAVTVLETPPMIVVGAVGYIETPFGLRALVNVWAQHLSEECRRRFYKNWYKSKKKAF 130
            |::|||..||||::|||.|:|||.|.|::||.|||:|..|||||||||.||||||||.|||||||
plant    66 KLHKKETCEAVTIIETPAMVVVGVVAYVKTPRGLRSLNTVWAQHLSEEVRRRFYKNWAKSKKKAF 130

  Fly   131 TKASKKWTDDLGKKSIENDFRKMLRYCKVIRVIAHSQIRLIK-QRQKKAHVMEIQLNGGSIEDKV 194
            |..:|::..:.|||.|:....||.:|..||||:||:|||.:| .:|||||:||||:|||:|..||
plant   131 TGYAKQYDSEDGKKGIQAQLEKMKKYATVIRVLAHTQIRKMKGLKQKKAHMMEIQINGGTIAQKV 195

  Fly   195 KWAREHLEKPIQVSNVFGQDEMIDCVGVTKGKGFKGVTSRWHTKKLPRKTHKGLRKVACIGAWHP 259
            .:|....||.|.:..||.:|||||.:|||||||::||.:||...:||||||:|||||||||||||
plant   196 DFAYSFFEKQIPIEAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLPRKTHRGLRKVACIGAWHP 260

  Fly   260 SRVSTTVARAGQKGYHHRTEINKKIYR---IGAGIHTKDGKVIKNNASTEYDLTDKSITPMGGFP 321
            :|||.|||||||.|||||||:||||||   :|...||         |.||||.|:|.:|||||||
plant   261 ARVSYTVARAGQNGYHHRTELNKKIYRLGKVGTEAHT---------AMTEYDRTEKDVTPMGGFP 316

  Fly   322 HYGEVNNDFVMIKGCCIGSKKRIITLRKSLLKHTKRSALEQIKLKFIDTSSKMGHGRFQTPADKL 386
            |||.|.:|::||||||:|.|||::|||:|||..|.|.|||:||||||||:|..|||||||..:|:
plant   317 HYGIVKDDYLMIKGCCVGPKKRVVTLRQSLLTQTSRLALEEIKLKFIDTASIFGHGRFQTSLEKM 381

  Fly   387 AFMGPLKK 394
            .|...:.|
plant   382 RFYNRVTK 389

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
RpL3NP_524316.1 PTZ00103 1..400 CDD:240267 254/398 (64%)
RP1NP_001031146.1 PTZ00103 1..389 CDD:240267 253/396 (64%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 1 1.000 511 1.000 Domainoid score I67
eggNOG 1 0.900 - - E1_COG0087
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 534 1.000 Inparanoid score I275
OMA 1 1.010 - - QHG62184
OrthoDB 1 1.010 - - D793191at2759
OrthoFinder 1 1.000 - - FOG0001847
OrthoInspector 1 1.000 - - otm3529
orthoMCL 1 0.900 - - OOG6_100665
Panther 1 1.100 - - LDO PTHR11363
Phylome 1 0.910 - -
SonicParanoid 1 1.000 - - X1206
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 1 0.960 - -
1312.840

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