DRSC/TRiP Functional Genomics Resources

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Protein Alignment RpL3 and rpl3l

DIOPT Version :9

Sequence 1:NP_524316.1 Gene:RpL3 / 41347 FlyBaseID:FBgn0020910 Length:416 Species:Drosophila melanogaster
Sequence 2:NP_001025612.1 Gene:rpl3l / 595000 XenbaseID:XB-GENE-966685 Length:407 Species:Xenopus tropicalis


Alignment Length:405 Identity:291/405 - (71%)
Similarity:348/405 - (85%) Gaps:0/405 - (0%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MSHRKFSAPRHGSMAFYPKKRSARHRGKVKAFPKDDASKPVHLTCFIGYKAGMTHIVREADRPGS 65
            ||||||||||||.:.|.|.|||.|||||||.:||||.|||||||.|:||||||||.:||..|.|.
 Frog     1 MSHRKFSAPRHGHLGFLPHKRSRRHRGKVKTWPKDDPSKPVHLTAFLGYKAGMTHTLREVHRTGL 65

  Fly    66 KINKKEVVEAVTVLETPPMIVVGAVGYIETPFGLRALVNVWAQHLSEECRRRFYKNWYKSKKKAF 130
            ||:|:|.|||||::||||::|||.|||:|||.|||:|..::|:|:|:||:||||:||||||||:|
 Frog    66 KISKREEVEAVTIIETPPLVVVGIVGYVETPRGLRSLKTIFAEHISDECKRRFYRNWYKSKKKSF 130

  Fly   131 TKASKKWTDDLGKKSIENDFRKMLRYCKVIRVIAHSQIRLIKQRQKKAHVMEIQLNGGSIEDKVK 195
            ||.||||.|:.|||.:|.||..|.:||||||||.|:|::|:..|||||||||||||||::.|||.
 Frog   131 TKYSKKWQDEEGKKQLEKDFSAMKKYCKVIRVIVHTQMKLLPLRQKKAHVMEIQLNGGTVADKVD 195

  Fly   196 WAREHLEKPIQVSNVFGQDEMIDCVGVTKGKGFKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPS 260
            ||.|.|||.:.|::|||||||||.:|||||||.:||||||||||||||||||||||||||||||:
 Frog   196 WAHEKLEKQVPVNSVFGQDEMIDVIGVTKGKGVRGVTSRWHTKKLPRKTHKGLRKVACIGAWHPA 260

  Fly   261 RVSTTVARAGQKGYHHRTEINKKIYRIGAGIHTKDGKVIKNNASTEYDLTDKSITPMGGFPHYGE 325
            ||:.|:||||||||||||||||||||||.|:|.:||||:||||:|:||:|||||||:|||||||:
 Frog   261 RVAYTIARAGQKGYHHRTEINKKIYRIGKGVHMEDGKVVKNNAATQYDITDKSITPLGGFPHYGQ 325

  Fly   326 VNNDFVMIKGCCIGSKKRIITLRKSLLKHTKRSALEQIKLKFIDTSSKMGHGRFQTPADKLAFMG 390
            |||||:|:|||.:|:|||::|||||||.||.|.|||.|:||||||:||.|||.|||..:|.||||
 Frog   326 VNNDFLMLKGCVVGTKKRVLTLRKSLLVHTSRRALEPIELKFIDTTSKFGHGCFQTDQEKRAFMG 390

  Fly   391 PLKKDRLKEEAAATT 405
            |.||..:|::....|
 Frog   391 PQKKHMVKDKPEPET 405

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
RpL3NP_524316.1 PTZ00103 1..400 CDD:240267 290/398 (73%)
rpl3lNP_001025612.1 PTZ00103 1..398 CDD:240267 289/396 (73%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 612 1.000 Domainoid score I187
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 651 1.000 Inparanoid score I782
OMA 1 1.010 - - QHG62184
OrthoDB 1 1.010 - - D362198at33208
OrthoFinder 1 1.000 - - FOG0001847
OrthoInspector 1 1.000 - - otm48827
Panther 1 1.100 - - O PTHR11363
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X1206
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
99.080

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