DRSC/TRiP Functional Genomics Resources

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Protein Alignment RpL3 and mrps-18C

DIOPT Version :10

Sequence 1:NP_524316.1 Gene:RpL3 / 41347 FlyBaseID:FBgn0020910 Length:416 Species:Drosophila melanogaster
Sequence 2:NP_498045.2 Gene:mrps-18C / 175666 WormBaseID:WBGene00016142 Length:403 Species:Caenorhabditis elegans


Alignment Length:404 Identity:88/404 - (21%)
Similarity:145/404 - (35%) Gaps:124/404 - (30%)


- Green bases have known domain annotations that are detailed below.


  Fly    47 IGYKAGMTHIVREADRPGSKINKKEVVEA------------VTVLETPPM-----IVVGAVGYIE 94
            :|...|..:::       ..:.:||.:.|            |:|::.|..     :||..:|.:.
 Worm    57 VGISQGTKNLL-------ETVIEKETLAASTIAFQNSQETNVSVVDIPDSSRRVGLVVRKIGMLP 114

  Fly    95 --TPFGLRAL---VNVWAQHL----SEECRRRFYKNWYKS----KKKAFTKASKKWTDDLGKKSI 146
              |..|.|.|   :.|...|:    |.|.       ||||    |:|||.:....|...:|..: 
 Worm   115 QWTNEGNRILCTVLEVDENHVVSITSPEA-------WYKSSAVGKRKAFNRHGPMWRVTVGAGN- 171

  Fly   147 ENDFRKMLRYCKVIRVIAHSQIRLIKQRQKKAHVMEIQLNGGSI---EDKVKWAREHLEKPIQVS 208
            ::..:..|.|                :||.....:.::...|..   ||.:..|.:.|:     :
 Worm   172 DDPTKYTLGY----------------RRQFVRAGIPVKEKLGCFLVTEDALPSAGQPLD-----A 215

  Fly   209 NVFGQDEMIDCVGVTKGKGFKGVTSRWHTKKLP-RKTHKGLRKVACIGAWHPSRVSTTVARAGQK 272
            ..||..:.:...|.|...||:|...||..:..| |:|.|..|::..:|:...:|:.......|..
 Worm   216 RHFGVGQYVTATGKTIDWGFQGGMHRWGMRGQPTRRTTKSHRRIGSVGSVGDARIWPGKRMPGHM 280

  Fly   273 GYHHRTEINKKIYRIGAGIHTKDGKVIKNNASTEYDLTDKSITPMGGFPHYGEVNNDFVMIKGCC 337
            ||..||....:|.||..     |.:||....|...|:              ||.    :::|. |
 Worm   281 GYEWRTVSGLEIVRINV-----DKQVIYVKGSVPGDI--------------GET----ILLKD-C 321

  Fly   338 IGSKKRII-------------------------TLRKSLLKHTKRS----ALEQIKLKFIDTSSK 373
            :..:||:.                         |:.|:||.:.|.|    ......:.|.|..:|
 Worm   322 LQEEKRLKSGPMPTWAPSLETIEEEPETEPEEGTIPKNLLFNEKFSPKLFRFTSPSILFTDADAK 386

  Fly   374 MGHGRFQTPADKLA 387
            ...||.:|.| |:|
 Worm   387 KATGRDKTKA-KIA 399

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
RpL3NP_524316.1 PTZ00103 1..400 CDD:240267 88/404 (22%)
mrps-18CNP_498045.2 rpl3p 104..319 CDD:444836 61/266 (23%)

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