DRSC/TRiP Functional Genomics Resources

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Protein Alignment RpL3 and rpl-3

DIOPT Version :9

Sequence 1:NP_524316.1 Gene:RpL3 / 41347 FlyBaseID:FBgn0020910 Length:416 Species:Drosophila melanogaster
Sequence 2:NP_001021254.1 Gene:rpl-3 / 175501 WormBaseID:WBGene00004414 Length:401 Species:Caenorhabditis elegans


Alignment Length:402 Identity:285/402 - (70%)
Similarity:336/402 - (83%) Gaps:3/402 - (0%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MSHRKFSAPRHGSMAFYPKKRSARHRGKVKAFPKDDASKPVHLTCFIGYKAGMTHIVREADRPGS 65
            ||||||||||||.|.|.|||||..:||::|||||||.|||:|||.|:|||||||||||:.|:|||
 Worm     1 MSHRKFSAPRHGHMGFTPKKRSRTYRGRIKAFPKDDKSKPIHLTAFLGYKAGMTHIVRDVDKPGS 65

  Fly    66 KINKKEVVEAVTVLETPPMIVVGAVGYIETPFGLRALVNVWAQHLSEECRRRFYKNWYKSKKKAF 130
            |:||||||||||::|||||::.|..||::||.|.|||..:||:|||||.|||||.||.|||||||
 Worm    66 KVNKKEVVEAVTIVETPPMVIAGVTGYVDTPQGPRALTTIWAEHLSEEARRRFYSNWAKSKKKAF 130

  Fly   131 TKASKKWTDDLGKKSIENDFRKMLRYCKVIRVIAHSQIRLIKQRQKKAHVMEIQLNGGSIEDKVK 195
            ||.:|||.|:.|||.||.||.|:.:||..||||||:|::::::||||||::|||:|||:||.||.
 Worm   131 TKYAKKWQDEDGKKLIEADFAKLKKYCSSIRVIAHTQMKILRRRQKKAHLVEIQVNGGTIEQKVD 195

  Fly   196 WAREHLEKPIQVSNVFGQDEMIDCVGVTKGKGFKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPS 260
            ||||||||.:||..||.||||||.:|||:|.||||||||||||||||||||||||||||||||||
 Worm   196 WAREHLEKQVQVDTVFAQDEMIDTIGVTRGHGFKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPS 260

  Fly   261 RVSTTVARAGQKGYHHRTEINKKIYRIGAGIHTKDGKVIKNNASTEYDLTDKSITPMGGFPHYGE 325
            ||:.|||||||||:||||.||.||||||....|::|   |||.|||:|||.|:||||||||.||.
 Worm   261 RVAFTVARAGQKGFHHRTIINNKIYRIGKSALTEEG---KNNGSTEFDLTQKTITPMGGFPRYGI 322

  Fly   326 VNNDFVMIKGCCIGSKKRIITLRKSLLKHTKRSALEQIKLKFIDTSSKMGHGRFQTPADKLAFMG 390
            ||.|::|::|..:|.|||:|||||||:..|||.|.|:|.||:||||||.|||||||.|:|.||||
 Worm   323 VNQDYIMLRGAVLGPKKRLITLRKSLITQTKRVAHEKINLKWIDTSSKTGHGRFQTTAEKRAFMG 387

  Fly   391 PLKKDRLKEEAA 402
            .||:|.|.|..|
 Worm   388 KLKRDFLAEAEA 399

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
RpL3NP_524316.1 PTZ00103 1..400 CDD:240267 283/398 (71%)
rpl-3NP_001021254.1 PTZ00103 1..397 CDD:240267 283/398 (71%)
RplC 3..372 CDD:294230 264/371 (71%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C160162594
Domainoid 1 1.000 569 1.000 Domainoid score I110
eggNOG 00.000 Not matched by this tool.
Hieranoid 1 1.000 - -
Homologene 1 1.000 - - H747
Inparanoid 1 1.050 604 1.000 Inparanoid score I505
Isobase 00.000 Not matched by this tool.
OMA 1 1.010 - - QHG62184
OrthoDB 1 1.010 - - D362198at33208
OrthoFinder 1 1.000 - - FOG0001847
OrthoInspector 1 1.000 - - oto20577
orthoMCL 1 0.900 - - OOG6_100665
Panther 1 1.100 - - LDO PTHR11363
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R1136
SonicParanoid 1 1.000 - - X1206
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
1413.940

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