DRSC/TRiP Functional Genomics Resources

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Protein Alignment RpL3 and rpl3

DIOPT Version :9

Sequence 1:NP_524316.1 Gene:RpL3 / 41347 FlyBaseID:FBgn0020910 Length:416 Species:Drosophila melanogaster
Sequence 2:NP_001120075.1 Gene:rpl3 / 100145083 XenbaseID:XB-GENE-971703 Length:403 Species:Xenopus tropicalis


Alignment Length:403 Identity:303/403 - (75%)
Similarity:357/403 - (88%) Gaps:1/403 - (0%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MSHRKFSAPRHGSMAFYPKKRSARHRGKVKAFPKDDASKPVHLTCFIGYKAGMTHIVREADRPGS 65
            |||||||||||||:.|.|:|||.|||||||:|||||.|||:|||.|:||||||||||||.|||||
 Frog     1 MSHRKFSAPRHGSLGFLPRKRSKRHRGKVKSFPKDDQSKPIHLTAFLGYKAGMTHIVREVDRPGS 65

  Fly    66 KINKKEVVEAVTVLETPPMIVVGAVGYIETPFGLRALVNVWAQHLSEECRRRFYKNWYKSKKKAF 130
            |:|||||||||||:|||||::||.|||::||.|||:|..::|:|:|:||:|||||||||||||||
 Frog    66 KVNKKEVVEAVTVVETPPMVIVGIVGYVQTPRGLRSLKTIFAEHISDECKRRFYKNWYKSKKKAF 130

  Fly   131 TKASKKWTDDLGKKSIENDFRKMLRYCKVIRVIAHSQIRLIKQRQKKAHVMEIQLNGGSIEDKVK 195
            ||..|||.||.|||.:|.||..|.:||:|||||||:|:||:..||||:|:||||:|||::.:||.
 Frog   131 TKYCKKWQDDEGKKQLEKDFASMKKYCQVIRVIAHTQMRLLPLRQKKSHLMEIQVNGGTVAEKVD 195

  Fly   196 WAREHLEKPIQVSNVFGQDEMIDCVGVTKGKGFKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPS 260
            ||||.||:.:.::.|||||||||.:|||||||:|||||||||||||||||:|||||||||||||:
 Frog   196 WAREKLEQQVAITGVFGQDEMIDVIGVTKGKGYKGVTSRWHTKKLPRKTHRGLRKVACIGAWHPA 260

  Fly   261 RVSTTVARAGQKGYHHRTEINKKIYRIGAGIHTKDGKVIKNNASTEYDLTDKSITPMGGFPHYGE 325
            ||:.:||||||||||||||||||||:||.|.|:||||::||||||:|||:||||.|:|||.||||
 Frog   261 RVAFSVARAGQKGYHHRTEINKKIYKIGQGYHSKDGKLVKNNASTDYDLSDKSINPLGGFVHYGE 325

  Fly   326 VNNDFVMIKGCCIGSKKRIITLRKSLLKHTKRSALEQIKLKFIDTSSKMGHGRFQTPADKLAFMG 390
            |.|||||:|||.||:|||::|||||||..|.|.|||:|.||||||:||.|||||||..:|.||||
 Frog   326 VKNDFVMLKGCVIGTKKRVLTLRKSLLVQTSRRALEKIDLKFIDTTSKFGHGRFQTAEEKKAFMG 390

  Fly   391 PLKKDRL-KEEAA 402
            ||||||| |||.|
 Frog   391 PLKKDRLAKEETA 403

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
RpL3NP_524316.1 PTZ00103 1..400 CDD:240267 300/399 (75%)
rpl3NP_001120075.1 PTZ00103 1..400 CDD:240267 299/398 (75%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 612 1.000 Domainoid score I187
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 1 1.000 - - H747
Inparanoid 1 1.050 651 1.000 Inparanoid score I782
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D362198at33208
OrthoFinder 1 1.000 - - FOG0001847
OrthoInspector 1 1.000 - - otm48827
Panther 1 1.100 - - LDO PTHR11363
Phylome 00.000 Not matched by this tool.
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R1136
SonicParanoid 1 1.000 - - X1206
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
99.190

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