DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG4820 and znf281

DIOPT Version :10

Sequence 1:NP_001097748.1 Gene:CG4820 / 41344 FlyBaseID:FBgn0037876 Length:362 Species:Drosophila melanogaster
Sequence 2:XP_002935748.1 Gene:znf281 / 733827 XenbaseID:XB-GENE-5933312 Length:796 Species:Xenopus tropicalis


Alignment Length:286 Identity:73/286 - (25%)
Similarity:118/286 - (41%) Gaps:40/286 - (13%)


- Green bases have known domain annotations that are detailed below.


  Fly    86 EAPAAMEQLRVQQAAAPDPLGIDELMSASDIKIEPIQLQMEEDPQAPYPENQLEQALSYGNAPG- 149
            :.|...|.:..::..:| |...|.|...:.||.|.|.   |.:....|.:.|.|........|| 
 Frog    37 QLPGPGEMILKKEPGSP-PHHTDFLQGLAGIKQEKIG---EHEQYRFYGDRQAEIVEVTVGGPGL 97

  Fly   150 -------EDILPLPEDYGEAQTEVATTTNEPAQRRSKNTAKIKSKKHTMRVGRKLIHVKVIDDKQ 207
                   .::|...|..|...||:  .:|:..:|.:....:.|||:.     |......|..|.:
 Frog    98 IPELGLNRELLIRTEKNGFDPTEI--PSNKKTKRLNSEAQEAKSKRR-----RSDSSKSVGGDGE 155

  Fly   208 PKRIVDRNGPSAKPCICEHCGRQFKDTSNLHVHLLRHTGTKPFECDQCHQKCYTLHLLRRHQLKH 272
            ...:    .|:.||.|||||...|:.:.:|..|:|.|||.:||:|.||:......:||:||:..|
 Frog   156 AASL----SPNQKPHICEHCSAAFRSSYHLRRHVLIHTGERPFQCSQCNMSFIQKYLLQRHEKIH 216

  Fly   273 T-EGPYACTFCGLEYSTNSSRVRHEREACKKGRAPQSKWEIIKKGERTFHCEVCDLWFLRAGNFT 336
            : |.|:.|..|.:::.......||:|               ...||:.:.|:.|..:|.|.....
 Frog   217 SGEKPFNCDQCNMKFIQKYHMERHKR---------------THSGEKPYKCDTCQQYFSRTDRLL 266

  Fly   337 QHINSSSHIENE-RRKKRKSNPTAIN 361
            :|..:.....|: ..:...|||:..|
 Frog   267 KHKRTCGETINKGSLEAGSSNPSLDN 292

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG4820NP_001097748.1 zf-AD 5..75 CDD:462262
SUF4-like 224..>279 CDD:411020 23/55 (42%)
C2H2 Zn finger 224..244 CDD:411020 8/19 (42%)
C2H2 Zn finger 224..244 CDD:275368 8/19 (42%)
C2H2 Zn finger 252..272 CDD:275368 7/19 (37%)
C2H2 Zn finger 279..297 CDD:275368 4/17 (24%)
C2H2 Zn finger 322..339 CDD:275368 4/16 (25%)
znf281XP_002935748.1 C2H2 Zn finger 168..188 CDD:275368 8/19 (42%)
zf-H2C2_2 180..205 CDD:463886 11/24 (46%)
C2H2 Zn finger 196..216 CDD:275368 7/19 (37%)
C2H2 Zn finger 224..244 CDD:275368 5/34 (15%)
zf-H2C2_2 236..261 CDD:463886 8/39 (21%)
C2H2 Zn finger 252..271 CDD:275368 5/18 (28%)
Blue background indicates that the domain is not in the aligned region.

Return to query results.
Submit another query.