DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG4820 and Zscan2

DIOPT Version :10

Sequence 1:NP_001097748.1 Gene:CG4820 / 41344 FlyBaseID:FBgn0037876 Length:362 Species:Drosophila melanogaster
Sequence 2:NP_001414652.1 Gene:Zscan2 / 683603 RGDID:1584548 Length:614 Species:Rattus norvegicus


Alignment Length:416 Identity:100/416 - (24%)
Similarity:143/416 - (34%) Gaps:99/416 - (23%)


- Green bases have known domain annotations that are detailed below.


  Fly     5 CRTCGKT------VVADECLQIFTPAGRKLLQCVRSITNCWLQNVQDLPN-------------HI 50
            |..||||      ::..|    .|..|.|..:|    ..|. ::..|..|             :.
  Rat   224 CPQCGKTFSRKSHLITHE----RTHTGEKYYKC----EECG-KSFSDGSNFSRHQTTHTGEKPYK 279

  Fly    51 CTDCQVLLSQV------QKFRR-----RCAKIEKYFAR-----RRRRMNLGEAPAAMEQ------ 93
            |.||....|:.      |:...     :||:..|.|:|     ..:|.:.||.|.:..:      
  Rat   280 CRDCGKSFSRSANLITHQRIHTGEKPFQCAECGKSFSRSPNLIAHQRTHTGEKPYSCPECGKSFG 344

  Fly    94 ----LRVQQA--AAPDPLGIDELMSASDIKIEPIQLQMEEDPQAPYPENQLEQALSYGNA----- 147
                |...|.  ....|....|...:.......|:.|.....:.||...:..|..|..:|     
  Rat   345 NRSSLNTHQGIHTGEKPYACKECGESFSYNSNLIRHQRIHTGEKPYKCTECGQKFSQSSALITHR 409

  Fly   148 ---PGEDILPLPEDYGEAQTEVATTTNEPAQRRSKNTAKIKSKKHTMRVGRKLIHVKVIDDKQPK 209
               .||.    |....|.....:.::|....||:    .:..|.:...|..|..       .|..
  Rat   410 RTHTGEK----PYQCSECGKSFSRSSNLATHRRT----HLVEKPYKCGVCGKSF-------SQSS 459

  Fly   210 RIVDRNG--PSAKPCICEHCGRQFKDTSNLHVHLLRHTGTKPFECDQCHQKCYTLH-LLRRHQLK 271
            .::...|  ...||..|..||..|..:|||..|...|||.||::|..| .||::.. .|..||..
  Rat   460 SLIAHQGMHTGEKPYECLTCGESFSWSSNLIKHQRIHTGEKPYKCGDC-GKCFSQRSQLVVHQRT 523

  Fly   272 HT-EGPYACTFCGLEYSTNSSRVRHER----------EACKKGRAPQSKWEI---IKKGERTFHC 322
            || |.||.|..||..:|..|..|.|:|          ..|.||.:..|...|   |..||:.:.|
  Rat   524 HTGEKPYQCLMCGKSFSRGSILVMHQRAHLGEKPYRCPECGKGFSWNSVLIIHQRIHTGEKPYKC 588

  Fly   323 EVCDLWFLRAGNFTQHINSSSHIENE 348
            ..|...|..:.||..|  ..:|::.:
  Rat   589 PECGKGFSNSSNFITH--QRTHLKEK 612

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG4820NP_001097748.1 zf-AD 5..75 CDD:462262 21/99 (21%)
SUF4-like 224..>279 CDD:411020 25/56 (45%)
C2H2 Zn finger 224..244 CDD:411020 8/19 (42%)
C2H2 Zn finger 224..244 CDD:275368 8/19 (42%)
C2H2 Zn finger 252..272 CDD:275368 7/20 (35%)
C2H2 Zn finger 279..297 CDD:275368 7/17 (41%)
C2H2 Zn finger 322..339 CDD:275368 5/16 (31%)
Zscan2NP_001414652.1 None

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