DRSC - DRSC Integrative Ortholog Prediction Tool

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits

Protein Alignment CG4820 and scrt

DIOPT Version :9

Sequence 1:	NP_001097748.1	Gene:	CG4820 / 41344	FlyBaseID:	FBgn0037876	Length:	362	Species:	Drosophila melanogaster
Sequence 2:	NP_001261390.1	Gene:	scrt / 38469	FlyBaseID:	FBgn0004880	Length:	653	Species:	Drosophila melanogaster

Alignment Length:	153	Identity:	40/153 - (26%)
Similarity:	62/153 - (40%)	Gaps:	32/153 - (20%)

- Green bases have known domain annotations that are detailed below.

  Fly   153 LPLPEDY------GEAQTEVATTTNEPAQRRSKNTAKIKSKKHTMRVGR---------------K 196
            :|.|:..      .|...:.||::|....:::..:...:|.|.....|:               |
  Fly   457 VPTPDQQKTKYTCSECGKQYATSSNLSRHKQTHRSLDSQSAKKCHTCGKAYVSMPALAMHLLTHK 521

  Fly   197 LIHVKVIDDK---QPKRIVD--RNGPSAKPCICEHCGRQFKDTSNLHVHLLRHTGTKPFECDQCH 256
            |.|...:..|   :|..:..  |:....||..|.|||:.|.|.|||..|:..|:..|.|||.:||
  Fly   522 LSHSCGVCGKLFSRPWLLQGHLRSHTGEKPYGCAHCGKAFADRSNLRAHMQTHSVDKNFECKRCH 586

  Fly   257 QKCYTLHLLRRHQLKHTEGPYAC 279
            :    ...|:.:..||.|.  ||
  Fly   587 K----TFALKSYLNKHLES--AC 603

Known Domains:

Indicated by green bases in alignment.

Gene	Sequence	Domain	Region	External ID	Identity
CG4820	NP_001097748.1	zf-AD	4..75	CDD:285071
		C2H2 Zn finger	224..244	CDD:275368	10/19 (53%)
		C2H2 Zn finger	252..272	CDD:275368	4/19 (21%)
		C2H2 Zn finger	279..297	CDD:275368	1/1 (100%)
		C2H2 Zn finger	322..339	CDD:275368
scrt	NP_001261390.1	zf-C2H2	467..489	CDD:278523	4/21 (19%)
		C2H2 Zn finger	469..489	CDD:275370	4/19 (21%)
		C2H2 Zn finger	500..520	CDD:275368	1/19 (5%)
		COG5048	520..>617	CDD:227381	31/90 (34%)
		C2H2 Zn finger	526..546	CDD:275368	3/19 (16%)
		zf-H2C2_2	539..562	CDD:290200	7/22 (32%)
		C2H2 Zn finger	554..574	CDD:275368	10/19 (53%)
		zf-C2H2	554..574	CDD:278523	10/19 (53%)
		zf-H2C2_2	566..590	CDD:290200	10/27 (37%)
		C2H2 Zn finger	582..599	CDD:275368	5/20 (25%)
Blue background indicates that the domain is not in the aligned region.

Information from Original Tools:

Tool	Simple Score	Weighted Score	Original Tool Information
Tool	Simple Score	Weighted Score	BLAST Result	Score	Score Type	Cluster ID
Compara	1	0.930	-	-		C45457091
Domainoid	0	0.000	Not matched by this tool.
eggNOG	0	0.000	Not matched by this tool.
Homologene	0	0.000	Not matched by this tool.
Inparanoid	0	0.000	Not matched by this tool.
Isobase	0	0.000	Not matched by this tool.
OMA	0	0.000	Not matched by this tool.
OrthoDB	0	0.000	Not matched by this tool.
OrthoFinder	0	0.000	Not matched by this tool.
OrthoInspector	0	0.000	Not matched by this tool.
orthoMCL	0	0.000	Not matched by this tool.
Panther	0	0.000	Not matched by this tool.
Phylome	0	0.000	Not matched by this tool.
RoundUp	0	0.000	Not matched by this tool.
SonicParanoid	0	0.000	Not matched by this tool.
	1	0.930