DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG4820 and rgr

DIOPT Version :10

Sequence 1:NP_001097748.1 Gene:CG4820 / 41344 FlyBaseID:FBgn0037876 Length:362 Species:Drosophila melanogaster
Sequence 2:NP_001163089.2 Gene:rgr / 35843 FlyBaseID:FBgn0267792 Length:889 Species:Drosophila melanogaster


Alignment Length:11 Identity:4/11 - (36%)
Similarity:8/11 - (72%) Gaps:0/11 - (0%)


- Green bases have known domain annotations that are detailed below.


  Fly    98 NLDLYQIKEQD 108
            |.|:.::|:.|
  Fly   417 NYDVERLKDDD 427

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG4820NP_001097748.1 zf-AD 5..75 CDD:462262
SUF4-like 224..>279 CDD:411020
C2H2 Zn finger 224..244 CDD:411020
C2H2 Zn finger 224..244 CDD:275368
C2H2 Zn finger 252..272 CDD:275368
C2H2 Zn finger 279..297 CDD:275368
C2H2 Zn finger 322..339 CDD:275368
rgrNP_001163089.2 MADF 334..425 CDD:214738 2/7 (29%)
MADF 466..556 CDD:214738
MADF_DNA_bdg 595..682 CDD:463144
C2H2 Zn finger 691..711 CDD:275368
C2H2 Zn finger 719..739 CDD:275368
COG5048 742..>824 CDD:227381
C2H2 Zn finger 747..767 CDD:275368
C2H2 Zn finger 775..795 CDD:275368
C2H2 Zn finger 803..818 CDD:275368
C2H2 Zn finger 831..851 CDD:275368
C2H2 Zn finger 859..877 CDD:275368
Blue background indicates that the domain is not in the aligned region.

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