DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG4820 and CG13123

DIOPT Version :10

Sequence 1:NP_001097748.1 Gene:CG4820 / 41344 FlyBaseID:FBgn0037876 Length:362 Species:Drosophila melanogaster
Sequence 2:NP_609315.1 Gene:CG13123 / 34303 FlyBaseID:FBgn0032150 Length:323 Species:Drosophila melanogaster


Alignment Length:322 Identity:66/322 - (20%)
Similarity:115/322 - (35%) Gaps:58/322 - (18%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MKEFCRTCGKTVVADECLQIFT-----PAGRKLLQCVRSI--TNCWLQNVQDLPNHICTDC-QVL 57
            :::.||.|   .|....:.|..     .:.:.:||.:.::  .|..|...::|| .||.|| :..
  Fly     3 LRKLCRIC---FVDSASVDIREHRSGGSSDQTVLQLIEAMFGWNIALNLTEELP-MICNDCLEDC 63

  Fly    58 LSQVQKFRRRCAKIEKYFARRRRRMNLGEAPAAMEQLRVQQA-AAPDPLGIDELMSASDIKIEPI 121
            |.|...||:..      ||.::......||...|.|:::... ..|:....||.....:.:..|:
  Fly    64 LQQYAFFRKLT------FANQQLLQLYNEAEVEMCQVKMDATEEEPENQASDEFEILEEFRRIPL 122

  Fly   122 QLQMEEDPQAPYPENQLEQALSYGNAPGE-----------DILPLPEDYGEAQTEVATTTNEPAQ 175
            . .:..||..|....|..:.......|.:           :.||            |||......
  Fly   123 D-YVVLDPDRPTETRQTRRRTDSCTKPSQRLANQDSLIVSEFLP------------ATTAQPRLD 174

  Fly   176 RRSKNTAKIKSKKHTMR----VGRKLIHVKVIDDKQPKRIVDRNGPSAKPCI--CEHCGRQFKDT 234
            .......:::|..:.||    ...:|.|..:.:..:..|::|.. ||....|  |::|...:...
  Fly   175 LSDSQLEQLESPAYEMRTVDYAAVELKHYNLDEYNEANRLLDVE-PSGSQAIYKCQYCPLAYASP 238

  Fly   235 SNLHVHLLRHTGTKPFECDQCHQKCYTLHLLRRH-QLKHTEGPYACTFCGLEYSTNSSRVRH 295
            ..|..| :|::..    |..|......:..|..| :.||..  :.|..|...:||:|:...|
  Fly   239 QYLKTH-VRNSHV----CKYCTTAFAKVRDLNEHIRQKHPH--HQCVVCSNNFSTSSNLRAH 293

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG4820NP_001097748.1 zf-AD 5..75 CDD:462262 19/77 (25%)
SUF4-like 224..>279 CDD:411020 11/55 (20%)
C2H2 Zn finger 224..244 CDD:411020 4/19 (21%)
C2H2 Zn finger 224..244 CDD:275368 4/19 (21%)
C2H2 Zn finger 252..272 CDD:275368 4/20 (20%)
C2H2 Zn finger 279..297 CDD:275368 6/17 (35%)
C2H2 Zn finger 322..339 CDD:275368
CG13123NP_609315.1 zf-AD 6..82 CDD:471776 21/85 (25%)
PHA00733 175..272 CDD:177301 19/102 (19%)
C2H2 Zn finger 228..245 CDD:275368 4/17 (24%)
C2H2 Zn finger 251..272 CDD:275368 4/20 (20%)
KREPA <269..>303 CDD:483960 8/27 (30%)
C2H2 Zn finger 277..298 CDD:275368 6/17 (35%)
Blue background indicates that the domain is not in the aligned region.

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