DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG4820 and si:ch211-276c2.4

DIOPT Version :10

Sequence 1:NP_001097748.1 Gene:CG4820 / 41344 FlyBaseID:FBgn0037876 Length:362 Species:Drosophila melanogaster
Sequence 2:XP_002664740.1 Gene:si:ch211-276c2.4 / 321704 ZFINID:ZDB-GENE-030131-423 Length:394 Species:Danio rerio


Alignment Length:247 Identity:69/247 - (27%)
Similarity:100/247 - (40%) Gaps:57/247 - (23%)


- Green bases have known domain annotations that are detailed below.


  Fly   111 MSASDIKIEPIQLQM-----EEDPQAPYPENQLEQALSYGNAPGEDILPLPEDYGEAQTEVATTT 170
            |...:::|:..:|:.     |||     .|.|.:|.|:......||.....:|..:...:.....
Zfish     1 MEFFEVEIDLSELEQSTVSDEED-----IEEQADQELNEDEDDEEDEDEDEDDDDDDDDDDDEDE 60

  Fly   171 NEPAQRRSKNTAKIKSKKHTMRVGRKLIHVKVIDDKQPKRIVDRNGPSAKPCICEHCGRQFKDTS 235
            :|....:||.|.|.....||                                 |..||:.:|..|
Zfish    61 DEDEYYKSKKTPKTSKTLHT---------------------------------CSQCGKNYKHIS 92

  Fly   236 NLHVHLLRHTGTKPFECDQCHQKCYTLHLLRRHQLKH-TEGPYACTFCGLEYSTNSSRVRHER-- 297
            :|.:|||.|||.|||.||||.:...||..|:.||:.| :|.||:|:.||..:|...|..:|::  
Zfish    93 SLRIHLLSHTGEKPFHCDQCEKTYSTLSGLKIHQVVHFSERPYSCSVCGRSFSRLDSCKQHQKTH 157

  Fly   298 --------EACKKGRAPQS---KWEIIKKGERTFHCEVCDLWFLRAGNFTQH 338
                    ..|.|.....|   :.:||..|.:.|.|..||..|.:|||...|
Zfish   158 DKVRDHVCTECGKSFTTFSQLKQHQIIHSGLKPFKCSYCDRSFTQAGNRKSH 209

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG4820NP_001097748.1 zf-AD 5..75 CDD:462262
SUF4-like 224..>279 CDD:411020 28/55 (51%)
C2H2 Zn finger 224..244 CDD:411020 9/19 (47%)
C2H2 Zn finger 224..244 CDD:275368 9/19 (47%)
C2H2 Zn finger 252..272 CDD:275368 9/19 (47%)
C2H2 Zn finger 279..297 CDD:275368 6/17 (35%)
C2H2 Zn finger 322..339 CDD:275368 8/17 (47%)
si:ch211-276c2.4XP_002664740.1 C2H2 Zn finger 81..101 CDD:275368 9/19 (47%)
COG5048 <90..369 CDD:227381 45/120 (38%)
C2H2 Zn finger 109..129 CDD:275368 9/19 (47%)
C2H2 Zn finger 137..157 CDD:275368 6/19 (32%)
C2H2 Zn finger 165..185 CDD:275368 4/19 (21%)
C2H2 Zn finger 193..213 CDD:275368 8/17 (47%)
C2H2 Zn finger 221..241 CDD:275368
C2H2 Zn finger 249..269 CDD:275368
C2H2 Zn finger 277..297 CDD:275368
C2H2 Zn finger 305..325 CDD:275368
C2H2 Zn finger 333..353 CDD:275368
C2H2 Zn finger 361..381 CDD:275368
Blue background indicates that the domain is not in the aligned region.

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