DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG4820 and CG42726

DIOPT Version :10

Sequence 1:NP_001097748.1 Gene:CG4820 / 41344 FlyBaseID:FBgn0037876 Length:362 Species:Drosophila melanogaster
Sequence 2:NP_732017.3 Gene:CG42726 / 318709 FlyBaseID:FBgn0261679 Length:441 Species:Drosophila melanogaster


Alignment Length:133 Identity:36/133 - (27%)
Similarity:50/133 - (37%) Gaps:24/133 - (18%)


- Green bases have known domain annotations that are detailed below.


  Fly   224 CEHCGRQFKDTSNLHVHLLRHTGTKPFECDQCHQKCYTLHLLRRHQLKHTEGPYACTFCGLEYST 288
            |:.|||:|..:|:|..||:.|.......|..||:......:|:||.|.|.:..:.|..|...:..
  Fly   103 CKECGRRFATSSHLKYHLMSHEKQSKHSCSVCHKSFKQPIVLQRHMLTHNQEKHLCPICQKVFRR 167

  Fly   289 NSSRVRHEREACKKGRAPQSKWEIIKKGERTFHCEVCDLWFLRAGNFTQHINSSSHIENERRKKR 353
            .||...|.......|              ..|.||:|...|....|..||:          ||..
  Fly   168 KSSLASHLAIHSDLG--------------LQFKCELCSKHFQNKANLNQHL----------RKHD 208

  Fly   354 KSN 356
            |:|
  Fly   209 KNN 211

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG4820NP_001097748.1 zf-AD 5..75 CDD:462262
SUF4-like 224..>279 CDD:411020 18/54 (33%)
C2H2 Zn finger 224..244 CDD:411020 9/19 (47%)
C2H2 Zn finger 224..244 CDD:275368 9/19 (47%)
C2H2 Zn finger 252..272 CDD:275368 7/19 (37%)
C2H2 Zn finger 279..297 CDD:275368 5/17 (29%)
C2H2 Zn finger 322..339 CDD:275368 6/16 (38%)
CG42726NP_732017.3 C2H2 Zn finger 74..94 CDD:275368
C2H2 Zn finger 103..123 CDD:275368 9/19 (47%)
COG5048 <112..288 CDD:227381 31/124 (25%)
C2H2 Zn finger 131..151 CDD:275368 7/19 (37%)
C2H2 Zn finger 158..178 CDD:275368 5/19 (26%)
C2H2 Zn finger 187..207 CDD:275368 8/29 (28%)
C2H2 Zn finger 216..236 CDD:275368
C2H2 Zn finger 244..264 CDD:275368
C2H2 Zn finger 272..290 CDD:275368
Blue background indicates that the domain is not in the aligned region.

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