DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG4820 and ztf-30

DIOPT Version :10

Sequence 1:NP_001097748.1 Gene:CG4820 / 41344 FlyBaseID:FBgn0037876 Length:362 Species:Drosophila melanogaster
Sequence 2:NP_498892.1 Gene:ztf-30 / 182317 WormBaseID:WBGene00015523 Length:397 Species:Caenorhabditis elegans


Alignment Length:102 Identity:24/102 - (23%)
Similarity:39/102 - (38%) Gaps:5/102 - (4%)


- Green bases have known domain annotations that are detailed below.


  Fly   224 CEHCGRQFKDTSNLHVHLLRHTGTKPFECDQCHQKCYTLHLLRRHQLK--HTEGPYACTFCGLEY 286
            |..|.:.|..:|:|..|.:: ...|.::|..|.:...:...||.|..|  |....|.|..|...:
 Worm    53 CSICSKVFCHSSSLSRHRMQ-AHFKSYKCTVCRKDISSSESLRTHMFKQHHISRMYMCRCCNWAF 116

  Fly   287 STNSSRVRHEREACKKGRAPQSKWEIIKKG--ERTFH 321
            ...|....|.:.|.....:..:...:|..|  .|:.|
 Worm   117 PDKSLLHIHLQTATNNNDSNNNNNSVIPHGVINRSCH 153

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG4820NP_001097748.1 zf-AD 5..75 CDD:462262
SUF4-like 224..>279 CDD:411020 15/56 (27%)
C2H2 Zn finger 224..244 CDD:411020 6/19 (32%)
C2H2 Zn finger 224..244 CDD:275368 6/19 (32%)
C2H2 Zn finger 252..272 CDD:275368 6/21 (29%)
C2H2 Zn finger 279..297 CDD:275368 4/17 (24%)
C2H2 Zn finger 322..339 CDD:275368 24/102 (24%)
ztf-30NP_498892.1 PHA00733 <51..103 CDD:177301 13/50 (26%)
C2H2 Zn finger 53..74 CDD:275368 6/21 (29%)
C2H2 Zn finger 80..101 CDD:275368 6/20 (30%)
C2H2 Zn finger 109..128 CDD:275368 4/18 (22%)
Blue background indicates that the domain is not in the aligned region.

Return to query results.
Submit another query.