DRSC/TRiP Functional Genomics Resources

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Protein Alignment SdhC and sdhc

DIOPT Version :9

Sequence 1:NP_001262472.1 Gene:SdhC / 41340 FlyBaseID:FBgn0037873 Length:171 Species:Drosophila melanogaster
Sequence 2:NP_001003523.2 Gene:sdhc / 445129 ZFINID:ZDB-GENE-040801-26 Length:169 Species:Danio rerio


Alignment Length:167 Identity:65/167 - (38%)
Similarity:94/167 - (56%) Gaps:4/167 - (2%)


- Green bases have known domain annotations that are detailed below.


  Fly     8 LIRSPALRQGLQMAAASRPVSMK-VVSVAETQKDE--SFFEKNERLGRELSPHLTIYQPQLTSML 69
            |:|:.| ||||..:.:...|..: .|.:..|..:|  .|:.||.||.|.:|||:|||:..:...:
Zfish     4 LLRTVA-RQGLYSSRSQFGVLYRHAVPMGTTSNEEMDKFWAKNTRLNRPMSPHMTIYKWSVPMAM 67

  Fly    70 SICHRGTGLALGVGVWGLGLGALISSHDISHYVTMVEGLQLSGATLTALKFIIAYPAGYHTANGI 134
            ||.|||||:||..|:....|.||:......:|:.::..|......|...||.:|:|..|||.|||
Zfish    68 SISHRGTGIALSSGISAFALAALVLPESYPYYLDLIHSLTFGPQFLAFSKFALAFPVVYHTYNGI 132

  Fly   135 RHLLWDTGRFLKIKEVYSTGYAMVATSFVLSAILALL 171
            |||.||.|:..||.|||.:||.::..:.:.|..||.:
Zfish   133 RHLAWDAGKGFKIPEVYRSGYVVLGLTVLTSIGLAAM 169

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
SdhCNP_001262472.1 SQR_TypeC_SdhC 52..170 CDD:239579 48/117 (41%)
sdhcNP_001003523.2 SQR_TypeC_SdhC 50..168 CDD:239579 48/117 (41%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C170590039
Domainoid 1 1.000 102 1.000 Domainoid score I6846
eggNOG 1 0.900 - - E1_COG2009
Hieranoid 1 1.000 - -
Homologene 1 1.000 - - H2256
Inparanoid 1 1.050 116 1.000 Inparanoid score I4799
OMA 1 1.010 - - QHG51899
OrthoDB 1 1.010 - - D1443173at2759
OrthoFinder 1 1.000 - - FOG0004205
OrthoInspector 1 1.000 - - oto39188
orthoMCL 1 0.900 - - OOG6_103173
Panther 1 1.100 - - LDO PTHR10978
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R2280
SonicParanoid 1 1.000 - - X2951
SwiftOrtho 1 1.000 - -
TreeFam 1 0.960 - -
ZFIN 00.000 Not matched by this tool.
1716.800

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