DRSC/TRiP Functional Genomics Resources

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Protein Alignment cu and CCR4

DIOPT Version :9

Sequence 1:NP_001097746.1 Gene:cu / 41339 FlyBaseID:FBgn0261808 Length:642 Species:Drosophila melanogaster
Sequence 2:NP_009381.1 Gene:CCR4 / 851212 SGDID:S000000019 Length:837 Species:Saccharomyces cerevisiae


Alignment Length:685 Identity:143/685 - (20%)
Similarity:227/685 - (33%) Gaps:220/685 - (32%)


- Green bases have known domain annotations that are detailed below.


  Fly   110 RQSAINEMCQRLCGPECRRPQGLTLDGVRQDFLRQYEIAEAVAKTSAMTSTVQMKQRLAARKLEF 174
            :|.|..:..|::.||....||.........|| :|..||||.......|....|:.   |..|..
Yeast   196 QQQAQQQAQQQVPGPFGPGPQAAPPALQPTDF-QQSHIAEASKSLVDCTKQALMEM---ADTLTD 256

  Fly   175 EKEMEMDEQLGVASPRNDINLGQSST-------VAATGMGEFEFEPPRDLLLYLVRMGSFNSAPK 232
            .|..:..:..|.::|.........||       :.|.|..|     ....||...::..:     
Yeast   257 SKTAKKQQPTGDSTPSGTATNSAVSTPLTPKIELFANGKDE-----ANQALLQHKKLSQY----- 311

  Fly   233 INNVDSQDD---GLVLPSGLSTPALLQHVQQLR-------GGGIEQPSLLTRGFLK-----PLLA 282
              ::|..||   .:|:|........|.|...|.       ...|.:...|||.:|.     .|.|
Yeast   312 --SIDEDDDIENRMVMPKDSKYDDQLWHALDLSNLQIFNISANIFKYDFLTRLYLNGNSLTELPA 374

  Fly   283 DEDVADGLRCLKLNSVSRVCSAP------------------------------------VEGDDI 311
            :......||.|.| |.:|:.|.|                                    |||:.:
Yeast   375 EIKNLSNLRVLDL-SHNRLTSLPAELGSCFQLKYFYFFDNMVTTLPWEFGNLCNLQFLGVEGNPL 438

  Fly   312 ---------------------------------RLLQWN-------------------------- 317
                                             |.::.|                          
Yeast   439 EKQFLKILTEKSVTGLIFYLRDNRPEIPLPHERRFIEINTDGEPQREYDSLQQSTEHLATDLAKR 503

  Fly   318 ---ILS-QTLGQH---NDGFVRCPEEALTWEHRKYLIVQEILQNQPDVICLQEVDHFKFLQ---T 372
               :|| .||.||   ...:...|..||:|::|:..:.::||....|::|||||:...|.:   .
Yeast   504 TFTVLSYNTLCQHYATPKMYRYTPSWALSWDYRRNKLKEQILSYDSDLLCLQEVESKTFEEYWVP 568

  Fly   373 VLGSQNYAGIFFPKPDSPCLYIEQNNGPDGCAIFYKRDKLQLQGYDTRILE-VW----------- 425
            :|....|.|||..|..:..::.:.:...|||.||:|||:.:|...|..... .|           
Yeast   569 LLDKHGYTGIFHAKARAKTMHSKDSKKVDGCCIFFKRDQFKLITKDAMDFSGAWMKHKKFQRTED 633

  Fly   426 ----RVQSNQVAIAARLRMRSSGREFCVATTHLKARH-------------GALL----AKLRNEQ 469
                .:..:.||:..:|:...||......||||   |             |.||    ..|:.|.
Yeast   634 YLNRAMNKDNVALFLKLQHIPSGDTIWAVTTHL---HWDPKFNDVKTFQVGVLLDHLETLLKEET 695

  Fly   470 GRDLIRFVKQFAGDTPLLLCGDFNAEPVEPIYATILGCDLLRLGSAYADVKLDREEILHPNADVG 534
            ..:..:.:|:|    |:|:|||||:.....:|      :|:..|...          :|...:..
Yeast   696 SHNFRQDIKKF----PVLICGDFNSYINSAVY------ELINTGRVQ----------IHQEGNGR 740

  Fly   535 EFVAKSMKR---------------EPPYTTWKIREEGEECHTIDYVFYTPDRLKIKNCLDFPAGE 584
            :|...|.|.               |.|:|.:    .......|||::::...|:::..|.....|
Yeast   741 DFGYMSEKNFSHNLALKSSYNCIGELPFTNF----TPSFTDVIDYIWFSTHALRVRGLLGEVDPE 801

  Fly   585 QIGK-NRTPSFQYPSDHFSLVCDFELLPPTENGKE 618
            .:.| ...|:.::||||..|:..||.:......|:
Yeast   802 YVSKFIGFPNDKFPSDHIPLLARFEFMKTNTGSKK 836

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
cuNP_001097746.1 EEP 312..609 CDD:382041 87/381 (23%)
CCR4NP_009381.1 LRR <213..474 CDD:227223 50/277 (18%)
leucine-rich repeat 339..358 CDD:275378 2/18 (11%)
leucine-rich repeat 359..381 CDD:275378 6/21 (29%)
leucine-rich repeat 382..404 CDD:275378 8/22 (36%)
leucine-rich repeat 405..427 CDD:275378 0/21 (0%)
leucine-rich repeat 428..439 CDD:275378 3/10 (30%)
CCR4 476..837 CDD:227564 88/388 (23%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG5239
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.810

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