DRSC/TRiP Functional Genomics Resources

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Protein Alignment cu and CNOT6

DIOPT Version :10

Sequence 1:NP_001097746.1 Gene:cu / 41339 FlyBaseID:FBgn0261808 Length:642 Species:Drosophila melanogaster
Sequence 2:NP_001357401.1 Gene:CNOT6 / 57472 HGNCID:14099 Length:557 Species:Homo sapiens


Alignment Length:346 Identity:91/346 - (26%)
Similarity:138/346 - (39%) Gaps:78/346 - (22%)


- Green bases have known domain annotations that are detailed below.


  Fly   333 CPEEALTWEHRKYLIVQEILQNQPDVICLQEVD---HFKFLQTVLGSQNYAGIFFPKPDSPCLYI 394
            ||..||.|::||..|:||||....|::.||||:   ::.|....|..:.|.|.|.||..:..:..
Human   210 CPSWALNWDYRKKAIIQEILSCNADIVSLQEVETEQYYSFFLVELKERGYNGFFSPKSRARTMSE 274

  Fly   395 EQNNGPDGCAIFYKRDKLQL----------------QGYDTRILEVWRVQSNQVAIAARLRMRS- 442
            ::....||||||:|.:|..|                :|.:..:..|....:..||:...||..| 
Human   275 QERKHVDGCAIFFKTEKFTLVQKHTVEFNQLAMANSEGSEAMLNRVMTKDNIGVAVLLELRKESI 339

  Fly   443 ---SGRE--------FCVATTHLK----------ARHGALLAKLRN---EQGRDLIRFVKQFAGD 483
               ||:.        ..||..|:.          .:....|::::|   :..|:|...|....|.
Human   340 EMPSGKPHLGTEKQLILVANAHMHWDPEYSDVKLVQTMMFLSEVKNIIDKASRNLKSSVLGEFGT 404

  Fly   484 TPLLLCGDFNAEPVEPIYATILGCDLLRLGSAYADVKLDREEILHPNADVGEF------------ 536
            .||:||.|.|:.|...:      .:.|..|....:.| |.:|:.: |..:..|            
Human   405 IPLVLCADLNSLPDSGV------VEYLSTGGVETNHK-DFKELRY-NESLTNFSCHGKNGTTNGR 461

  Fly   537 VAKSMKREP-------PYTTWKIREEGEECHTIDYVFYTPDRLK---IKNCLDFPAGEQIGKNRT 591
            :....|.:.       |||.:....:|    .|||:||:..:|.   |...||.....:...:..
Human   462 ITHGFKLQSAYESGLMPYTNYTFDFKG----IIDYIFYSKPQLNTLGILGPLDHHWLVENNISGC 522

  Fly   592 PSFQYPSDHFSLVCDFELLPP 612
            |....|||||||....|||.|
Human   523 PHPLIPSDHFSLFAQLELLLP 543

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
cuNP_001097746.1 EEP 312..609 CDD:469791 87/341 (26%)
CNOT6NP_001357401.1 LRR <33..>133 CDD:443914
leucine-rich repeat 33..52 CDD:275378
LRR 1 52..73
leucine-rich repeat 53..75 CDD:275378
LRR 2 75..96
leucine-rich repeat 76..98 CDD:275378
LRR 3 98..120
leucine-rich repeat 99..121 CDD:275378
LRR 4 121..143
leucine-rich repeat 122..133 CDD:275378
Nuclease domain. /evidence=ECO:0000250 153..557 91/346 (26%)
Deadenylase_CCR4a 191..540 CDD:197340 87/341 (26%)
Blue background indicates that the domain is not in the aligned region.

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