DRSC/TRiP Functional Genomics Resources

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Protein Alignment cu and nocta

DIOPT Version :10

Sequence 1:NP_001097746.1 Gene:cu / 41339 FlyBaseID:FBgn0261808 Length:642 Species:Drosophila melanogaster
Sequence 2:XP_700794.1 Gene:nocta / 572044 ZFINID:ZDB-GENE-050208-306 Length:432 Species:Danio rerio


Alignment Length:423 Identity:166/423 - (39%)
Similarity:221/423 - (52%) Gaps:91/423 - (21%)


- Green bases have known domain annotations that are detailed below.


  Fly   219 LYLVRMGSFNSAPKINNVDSQDDGLVLPSGLSTPALLQ-HVQQ-------------LRGGG---I 266
            |.:.:||| ||:.::.:        .|...||:.||.. ||..             ||..|   .
Zfish    55 LQVCQMGS-NSSSRLFS--------TLAQTLSSAALTDPHVDADDYEYEQADPDVLLRECGEVLR 110

  Fly   267 EQPSLLTRGFLKPLLADEDVADGLRCLKLNSVSRVCSAPVEGDDIRLLQWNILSQTLGQHNDGFV 331
            .:|..|.|.|:                    ::|.||  ::...:|::|||||:|.||:..||||
Zfish   111 NRPPRLHREFI--------------------MTRACS--LQNSPLRIMQWNILAQALGEGKDGFV 153

  Fly   332 RCPEEALTWEHRKYLIVQEILQNQPDVICLQEVDH-FKFLQTVLGSQNYAGIFFPKPDSPCLYIE 395
            |||.|||.|..|||||::|||..:|||:||||||| |...|.||.|..|...|.|||.||||.:.
Zfish   154 RCPMEALNWSERKYLILEEILTYRPDVVCLQEVDHYFDTFQPVLSSLGYQSSFCPKPCSPCLDVH 218

  Fly   396 QNNGPDGCAIFYKRDKLQLQGYDTRILEVWRVQSNQVAIAARLRMRSSGREFCVATTHLKARHGA 460
            .||||||||:|:.|.:.|:.......|....:::||||:.|.||.:.:||.||||.||||||.| 
Zfish   219 NNNGPDGCALFFNRRRFQMLHTAHLRLSAMMLKTNQVAVVATLRCKLTGRVFCVAVTHLKARSG- 282

  Fly   461 LLAKLRNEQGRDLIRFVKQFAGDT-------------PLLLCGDFNAEPVEPIY----ATILGCD 508
             ....|:.||.:|::.:.:....:             ||::||||||||.|.:|    ::.||.|
Zfish   283 -WEAFRSAQGANLLQQLHEITSQSNPEMHQDDQTEGIPLIVCGDFNAEPNEEVYRHFRSSSLGLD 346

  Fly   509 LLRLGSAYADVKLDREEILHPNADVGEFVAKSMKREPPYTTWKIREEGEECHTIDYVFYTPDRLK 573
                 |.|..:..||                  ..|||||:||||..||.|.|:||::|:....:
Zfish   347 -----SVYKCLSDDR------------------TTEPPYTSWKIRPSGECCSTLDYIWYSEKAFE 388

  Fly   574 IKNCLDFPAGEQIGKNRTPSFQYPSDHFSLVCD 606
            :...|..|:.||||.:|.|||.|||||.|||||
Zfish   389 VDAVLRIPSEEQIGPDRLPSFHYPSDHLSLVCD 421

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
cuNP_001097746.1 EEP 312..609 CDD:469791 143/313 (46%)
noctaXP_700794.1 Deadenylase_nocturnin 134..424 CDD:197330 143/313 (46%)

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