DRSC/TRiP Functional Genomics Resources

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Protein Alignment cu and cnot6l

DIOPT Version :10

Sequence 1:NP_001097746.1 Gene:cu / 41339 FlyBaseID:FBgn0261808 Length:642 Species:Drosophila melanogaster
Sequence 2:NP_001018474.1 Gene:cnot6l / 553665 ZFINID:ZDB-GENE-050522-302 Length:559 Species:Danio rerio


Alignment Length:364 Identity:86/364 - (23%)
Similarity:134/364 - (36%) Gaps:106/364 - (29%)


- Green bases have known domain annotations that are detailed below.


  Fly   333 CPEEALTWEHRKYLIVQEILQNQPDVICLQEVD---HFKFLQTVLGSQNYAGIFFPKPDSPCLYI 394
            ||..||.||:||..|::||.....|:|.||||:   ::.|....|..:.|.|.|.||..:..:..
Zfish   205 CPSWALNWEYRKKGIMEEITNCDADIISLQEVETEQYYTFFLETLKDRGYDGFFCPKSRAKLVSE 269

  Fly   395 EQNNGPDGCAIFYKRDKLQLQGYDTRILEVWRVQSNQVAIAARLRMRSSGREFCVATTHLKARHG 459
            ::....|||.:|:|.:|..|       ::...|:.||||:|     .|.|.|..:.....|...|
Zfish   270 QERKHVDGCGVFFKTEKFAL-------VQKHTVEFNQVAMA-----NSEGSEVMLNRVMTKDNIG 322

  Fly   460 -ALLAKLRNE----------------------------------QGRDLIRFVKQFA-------- 481
             |:|.:::.:                                  |....:..:|..|        
Zfish   323 VAVLLEVKEDLFAAGLKPPPEKQLLLVANAHMHWDPEYSDVKLIQTMMFLSELKSIAERASGSIN 387

  Fly   482 --------GDTPLLLCGDFNAEPVEPIYATILGCDLLRLGSAYADVKLDREEILHPNADVGEFVA 538
                    ...|::||.|.|:.|...:      .:.|..|.. |:...|.:|:.:.:. :..|..
Zfish   388 SSSPTSETSSIPIVLCADLNSLPDSGV------VEYLSNGGV-AENHKDFKELRYSDC-LTNFSC 444

  Fly   539 KSMKREP-------------------PYTTWKIREEGEECHTIDYVFYTPDRLKIKNCLDFPAGE 584
            .....:|                   |||.:....:|    .|||:|::...:.:...|. |...
Zfish   445 NGKNGKPDGSITHSFQLKSAYEGNLMPYTNYTYDFKG----VIDYIFFSKTHMSVLGVLG-PLET 504

  Fly   585 QIGKNRT----PSFQYPSDHFSLVCDFEL---LPPTENG 616
            |..|:..    |....|||||||:...|.   |||. ||
Zfish   505 QWLKDNNITGCPHPHIPSDHFSLLAQLEYHHPLPPL-NG 542

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
cuNP_001097746.1 EEP 312..609 CDD:469791 80/352 (23%)
cnot6lNP_001018474.1 Nuclease domain. /evidence=ECO:0000250 1..550 86/364 (24%)
Required for interaction with cnot1, cnot3 and cnot7. /evidence=ECO:0000250 1..148
LRR <32..>133 CDD:443914
leucine-rich repeat 32..52 CDD:275378
leucine-rich repeat 53..75 CDD:275378
leucine-rich repeat 76..98 CDD:275378
leucine-rich repeat 99..121 CDD:275378
leucine-rich repeat 122..133 CDD:275378
Deadenylase_CCR4b 186..533 CDD:197339 80/352 (23%)
Blue background indicates that the domain is not in the aligned region.

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