DRSC/TRiP Functional Genomics Resources

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Protein Alignment cu and noct

DIOPT Version :9

Sequence 1:NP_001097746.1 Gene:cu / 41339 FlyBaseID:FBgn0261808 Length:642 Species:Drosophila melanogaster
Sequence 2:NP_001016531.1 Gene:noct / 549285 XenbaseID:XB-GENE-1014542 Length:458 Species:Xenopus tropicalis


Alignment Length:363 Identity:165/363 - (45%)
Similarity:208/363 - (57%) Gaps:29/363 - (7%)


- Green bases have known domain annotations that are detailed below.


  Fly   250 STPALLQHVQQLRGGGIEQPSLLTRGFLKPLLADEDVA--DGLRCLKLNSVSRVCSAPVEGDDIR 312
            |:.|:.||.:.|.....:|...|..   |.||.:..||  |....|..:.||....:..:....|
 Frog   110 SSAAVSQHQELLETPDHDQSESLDP---KDLLEECQVALQDRPARLHRDLVSLRNDSGSQPRSFR 171

  Fly   313 LLQWNILSQTLGQHNDGFVRCPEEALTWEHRKYLIVQEILQNQPDVICLQEVDH-FKFLQTVLGS 376
            ::|||||:|.||:..|.|:.||.|||.||.|||||::|||..||||:||||||| |...|.:|..
 Frog   172 VMQWNILAQALGEGKDNFIMCPMEALKWEERKYLILEEILMYQPDVLCLQEVDHYFDTFQPILSR 236

  Fly   377 QNYAGIFFPKPDSPCLYIEQNNGPDGCAIFYKRDKLQLQGYDTRILEVWRVQSNQVAIAARLRMR 441
            ..|...|..||.||||.:|.||||||||:|:.:|:.:|.......|....:::||||||..|:..
 Frog   237 LGYQCTFLAKPWSPCLDVEHNNGPDGCALFFLQDRFRLVNSAKIRLSARTLKTNQVAIAETLQCC 301

  Fly   442 SSGREFCVATTHLKARHGALLAKLRNEQGRDLIRFVKQFA-GDT-PLLLCGDFNAEPVEPIYATI 504
            .:||..|.|.||||||.|  ..:.|..||.||:..::... |.| ||::||||||||.|.:|...
 Frog   302 ETGRLLCFAVTHLKARTG--WERFRLAQGSDLLHNLESITEGATVPLIICGDFNAEPTEEVYKRF 364

  Fly   505 LGCDLLRLGSAYADVKLDREEILHPNADVGEFVAKSMKREPPYTTWKIREEGEECHTIDYVFYTP 569
            .... |.|.|||   ||..|:        ||       .||||||||||..||.|||:||::|:.
 Frog   365 ASSS-LNLNSAY---KLLSED--------GE-------SEPPYTTWKIRPTGESCHTLDYIWYSQ 410

  Fly   570 DRLKIKNCLDFPAGEQIGKNRTPSFQYPSDHFSLVCDF 607
            ..|::.:.|..|..||||.||.|||.|||||.||||||
 Frog   411 HALRVNSALGLPTEEQIGPNRLPSFNYPSDHLSLVCDF 448

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
cuNP_001097746.1 EEP 312..609 CDD:382041 149/299 (50%)
noctNP_001016531.1 Deadenylase_nocturnin 171..450 CDD:197330 149/299 (50%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 230 1.000 Domainoid score I2409
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 1 1.000 - - H7661
Inparanoid 1 1.050 274 1.000 Inparanoid score I2909
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0007080
OrthoInspector 1 1.000 - - oto105580
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R1970
SonicParanoid 1 1.000 - - X3966
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
77.080

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