DRSC/TRiP Functional Genomics Resources

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Protein Alignment cu and Lrrc27

DIOPT Version :10

Sequence 1:NP_001097746.1 Gene:cu / 41339 FlyBaseID:FBgn0261808 Length:642 Species:Drosophila melanogaster
Sequence 2:NP_001137228.1 Gene:Lrrc27 / 499281 RGDID:1559981 Length:513 Species:Rattus norvegicus


Alignment Length:451 Identity:87/451 - (19%)
Similarity:140/451 - (31%) Gaps:155/451 - (34%)


- Green bases have known domain annotations that are detailed below.


  Fly   193 INLGQSSTVAATGMGEFEFEPPRDLLLY--LVRMGSFNSAPKINNVDSQDDGLV-LPSGLSTPAL 254
            :.|||.:|:.|..:.....|.|..|::.  ||.:.:|.....:.|....|:.|. :|:..|...|
  Rat   132 VELGQVTTLTALNLRHCPLEFPPYLIVQKGLVSILTFLRICSVENAFPGDESLPGVPTAKSDLLL 196

  Fly   255 -LQHVQQLRGGG---IEQPSLLTR---GFLKPLLADEDVADGLRCLKLNSVSRVCSAPVEGDDIR 312
             |.|.......|   ::|.:.:.:   .|..|:    |..|.....|.:|.|.:..:.   ::||
  Rat   197 PLPHKDLSSENGLNVLDQEAAVVKEKGDFFPPM----DRLDLSELRKSSSSSEIWPSK---EEIR 254

  Fly   313 LLQWNILSQTLGQHNDGFVRCPEEALTWEHRKYLIVQEILQNQPDVICLQEVDHFKFLQTVL--- 374
            ..                         |:.|     |||::|:.     .||...|.|...|   
  Rat   255 RF-------------------------WKLR-----QEIVENEQ-----VEVQENKLLAVELPPN 284

  Fly   375 ---------------------GSQNYAGIFFPKPDSPCLY---IEQNNGPDGCAIFY-----KRD 410
                                 .|.::.||.   |:....|   :......|...:.:     |..
  Rat   285 LKAAINAKERKCRKPWPTLRKRSTSFRGIL---PNLSSTYQNTVHTKRMDDTHKMAFQELQEKER 346

  Fly   411 KLQLQGYDTRILEVWRVQSNQVAIAARLRMRSSGREFCVATTHLKARHGALLAKLRNEQGRDLIR 475
            .|:.|..|.|.|:.||.|:.      .:|.|   |||    :..:..|       ||.....:  
  Rat   347 MLEQQRRDKRALQDWREQTQ------LMRHR---REF----SKFQPLH-------RNTMASKI-- 389

  Fly   476 FVKQFAGDTPLLLCGDFNAEPVEPIYATILGCDLLRLGSAYADVKLDREEILHPNADVG------ 534
               .||.|..     |:...|..|                :..||..||.|.....::.      
  Rat   390 ---PFATDLT-----DYEKMPASP----------------FGKVKPRREGIAQKRIEISTSPLAE 430

  Fly   535 ----------EFVAKSMKREPPYTTWKIREEGEECHTIDYVFYTPDRLKIKNCLD----FP 581
                      :..|:|.....|  |..|:...::..|...:.....|||::..|:    ||
  Rat   431 LEDKIRRHTQQIRARSFLGTNP--TQDIKTANQDLETTKKLQEELRRLKLEMTLNKDHSFP 489

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
cuNP_001097746.1 EEP 312..609 CDD:469791 58/322 (18%)
Lrrc27NP_001137228.1 LRR <50..>156 CDD:443914 7/23 (30%)
leucine-rich repeat 50..69 CDD:275378
leucine-rich repeat 70..93 CDD:275378
leucine-rich repeat 94..116 CDD:275378
leucine-rich repeat 117..139 CDD:275378 3/6 (50%)
leucine-rich repeat 140..151 CDD:275378 1/10 (10%)
Blue background indicates that the domain is not in the aligned region.

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