DRSC/TRiP Functional Genomics Resources

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Protein Alignment cu and CNOT6L

DIOPT Version :10

Sequence 1:NP_001097746.1 Gene:cu / 41339 FlyBaseID:FBgn0261808 Length:642 Species:Drosophila melanogaster
Sequence 2:NP_001374771.1 Gene:CNOT6L / 246175 HGNCID:18042 Length:616 Species:Homo sapiens


Alignment Length:356 Identity:93/356 - (26%)
Similarity:132/356 - (37%) Gaps:100/356 - (28%)


- Green bases have known domain annotations that are detailed below.


  Fly   333 CPEEALTWEHRKYLIVQEILQNQPDVICLQEVD---HFKFLQTVLGSQNYAGIFFPKPDSPCLYI 394
            ||..||.||:||..|::||:....|:|.||||:   :|......|..:.|.|.|.||..:..:..
Human   271 CPSWALNWEYRKKGIMEEIVNCDADIISLQEVETEQYFTLFLPALKERGYDGFFSPKSRAKIMSE 335

  Fly   395 EQNNGPDGCAIFYKRDKLQLQGYDTRILEVWRVQSNQVAIAARLRMRSSGREFCVATTHLKARHG 459
            ::....||||||:|.:|..|       ::...|:.||||:|     .|.|.|..:.....|...|
Human   336 QERKHVDGCAIFFKTEKFTL-------VQKHTVEFNQVAMA-----NSDGSEAMLNRVMTKDNIG 388

  Fly   460 -ALLAKLRNE------------------------------------QGRDLIRFVKQF------- 480
             |::.::..|                                    |....:..||..       
Human   389 VAVVLEVHKELFGAGMKPIHAADKQLLIVANAHMHWDPEYSDVKLIQTMMFVSEVKNILEKASSR 453

  Fly   481 -------AGDTPLLLCGDFNAEPVEPIYATILGCDLLRLGSAYADVKLDREEILHP--------N 530
                   ....||:||.|.|:.|...:      .:.|..|.. ||...|.:|:.:.        |
Human   454 PGSPTADPNSIPLVLCADLNSLPDSGV------VEYLSNGGV-ADNHKDFKELRYNECLMNFSCN 511

  Fly   531 ADVGE--------FVAKSMKRE--PPYTTWKIREEGEECHTIDYVFYTPDRLKIKNCLDFPAGEQ 585
            ...|.        |..||....  .|||.:....:|    .|||:||:...:.:...|. |...|
Human   512 GKNGSSEGRITHGFQLKSAYENNLMPYTNYTFDFKG----VIDYIFYSKTHMNVLGVLG-PLDPQ 571

  Fly   586 --IGKNRT--PSFQYPSDHFSLVCDFELLPP 612
              :..|.|  |....|||||||:...||.||
Human   572 WLVENNITGCPHPHIPSDHFSLLTQLELHPP 602

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
cuNP_001097746.1 EEP 312..609 CDD:469791 89/351 (25%)
CNOT6LNP_001374771.1 LRR <99..>199 CDD:443914
leucine-rich repeat 99..118 CDD:275378
leucine-rich repeat 119..141 CDD:275378
leucine-rich repeat 142..156 CDD:275378
Deadenylase_CCR4b 252..599 CDD:197339 89/351 (25%)
Blue background indicates that the domain is not in the aligned region.

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