DRSC/TRiP Functional Genomics Resources

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Protein Alignment cu and Cnot6l

DIOPT Version :10

Sequence 1:NP_001097746.1 Gene:cu / 41339 FlyBaseID:FBgn0261808 Length:642 Species:Drosophila melanogaster
Sequence 2:NP_849185.2 Gene:Cnot6l / 231464 MGIID:2443154 Length:555 Species:Mus musculus


Alignment Length:356 Identity:98/356 - (27%)
Similarity:135/356 - (37%) Gaps:100/356 - (28%)


- Green bases have known domain annotations that are detailed below.


  Fly   333 CPEEALTWEHRKYLIVQEILQNQPDVICLQEVD---HFKFLQTVLGSQNYAGIFFPKPDSPCLYI 394
            ||..||.||:||..|::||:....|:|.||||:   :|......|..:.|.|.|.||..:..:..
Mouse   210 CPSWALNWEYRKKGIMEEIVNWDADIISLQEVETEQYFTLFLPALKDRGYDGFFSPKSRAKIMSE 274

  Fly   395 EQNNGPDGCAIFYKRDKLQLQGYDTRILEVWRVQSNQVAIAARLRMRSSGRE-----------FC 448
            ::....||||||:|.:|..|       ::...|:.||||:|     .|.|.|           ..
Mouse   275 QERKHVDGCAIFFKTEKFTL-------VQKHTVEFNQVAMA-----NSDGSEAMLNRVMTKDNIG 327

  Fly   449 VAT----------THLKARHGA---LLAKLRNEQGRD-------LIR---FVKQF---------- 480
            ||.          |.:|..|.|   ||.........|       ||:   ||.:.          
Mouse   328 VAVVLEVHKELFGTGMKPIHAADKQLLIVANAHMHWDPEYSDVKLIQTMMFVSEVKNILEKASSR 392

  Fly   481 -------AGDTPLLLCGDFNAEPVEPIYATILGCDLLRLGSAYADVKLDREEILH---------- 528
                   ....||:||.|.|:.|...:      .:.|..|.. ||...|.:|:.:          
Mouse   393 PGSPTADPNSIPLVLCADLNSLPDSGV------VEYLSNGGV-ADNHKDFKELRYNECLMNFSCS 450

  Fly   529 --PNADVGE----FVAKSMKRE--PPYTTWKIREEGEECHTIDYVFYTPDRLKIKNCLDFPAGEQ 585
              ..:..|.    |..||....  .|||.:....:|    .|||:||:...:.:...|. |...|
Mouse   451 GKNGSSEGRITHGFQLKSAYENNLMPYTNYTFDFKG----VIDYIFYSKTHMNVLGVLG-PLDPQ 510

  Fly   586 --IGKNRT--PSFQYPSDHFSLVCDFELLPP 612
              :..|.|  |....|||||||:...||.||
Mouse   511 WLVENNITGCPHPHIPSDHFSLLTQLELHPP 541

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
cuNP_001097746.1 EEP 312..609 CDD:469791 94/351 (27%)
Cnot6lNP_849185.2 Required for interaction with CNOT1, CNOT3 and CNOT7. /evidence=ECO:0000250 1..152
LRR <38..>138 CDD:443914
leucine-rich repeat 38..57 CDD:275378
leucine-rich repeat 58..80 CDD:275378
leucine-rich repeat 81..103 CDD:275378
leucine-rich repeat 104..126 CDD:275378
leucine-rich repeat 127..138 CDD:275378
Nuclease domain. /evidence=ECO:0000250 158..555 98/356 (28%)
Deadenylase_CCR4b 191..538 CDD:197339 94/351 (27%)
Blue background indicates that the domain is not in the aligned region.

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