DRSC/TRiP Functional Genomics Resources

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Protein Alignment cu and twin

DIOPT Version :10

Sequence 1:NP_001097746.1 Gene:cu / 41339 FlyBaseID:FBgn0261808 Length:642 Species:Drosophila melanogaster
Sequence 2:XP_313691.2 Gene:twin / 1274550 VectorBaseID:AGAMI1_006235 Length:548 Species:Anopheles gambiae


Alignment Length:367 Identity:92/367 - (25%)
Similarity:139/367 - (37%) Gaps:109/367 - (29%)


- Green bases have known domain annotations that are detailed below.


  Fly   333 CPEEALTWEHRKYLIVQEILQNQPDVICLQEVD---HFKFLQTVLGSQNYAGIFFPKPDSPCLYI 394
            ||..||:||:||..|:.||.....|:|.||||:   .|.|.:..|.:..|.|||.||..:..:..
Mosquito   207 CPSWALSWEYRKKAILDEIRHYAADIISLQEVETDQFFNFFKPELKNDGYEGIFSPKSRAKTMSE 271

  Fly   395 EQNNGPDGCAIFYKRDKLQL----------------QGYDTRILEVWRVQSNQVAIAARLRMRSS 443
            ......||||||::..|..|                :|.|..:..|  :..:.:.:||.|:::..
Mosquito   272 ADRKYVDGCAIFFRSAKFTLIKEHLVEFNQLAMANAEGSDNMLNRV--MPKDNIGLAALLKVKEG 334

  Fly   444 GRE--------------FCVATTH-------LKARHGALLAK----LRNEQGRDLIRFVKQFAGD 483
            ..|              .|.|..|       :|.....:|:.    :.:|.|.......|....:
Mosquito   335 AWESVSSEAAQISQPILVCTAHIHWDPEFCDVKLIQTMMLSNELKTILDEAGLSFRPGHKFDVNN 399

  Fly   484 TPLLLCGDFNAEP----VEPIYA--------------------TILGCDL-------LRLGSAYA 517
            ..|:||||||:.|    :|.:.|                    .|..||.       .:|.|||:
Mosquito   400 VQLVLCGDFNSLPDSGVIEFLSAGRVSMDHQDFKELGYKSCLQRISNCDTPNEFTHSFKLASAYS 464

  Fly   518 DVKLDREEILHPNADVGEFVAKSMKREPPYTTWKIREEGEECHTIDYVFYTPDRLKIKNCLDFPA 582
                  |:|:                  |||.:....:|    .|||:||:...:.....|...:
Mosquito   465 ------EDIM------------------PYTNYTFEFKG----IIDYIFYSKQGMVPLGLLGPIS 501

  Fly   583 GEQIGKNRT---PSFQYPSDHFSLVCDFELL-PPTENGKESG 620
            .|.:..|:.   |....|||||.|:.:.||: .||...:.:|
Mosquito   502 PEWLRDNKVVGCPHPHIPSDHFPLLVELELIHMPTAGAQPNG 543

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
cuNP_001097746.1 EEP 312..609 CDD:469791 87/353 (25%)
twinXP_313691.2 LRR <42..>134 CDD:443914
leucine-rich repeat 55..77 CDD:275380
leucine-rich repeat 78..100 CDD:275380
leucine-rich repeat 101..123 CDD:275380
Deadenylase_CCR4 188..531 CDD:197331 87/353 (25%)
Blue background indicates that the domain is not in the aligned region.

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