DRSC/TRiP Functional Genomics Resources

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Protein Alignment cu and Cnot6

DIOPT Version :10

Sequence 1:NP_001097746.1 Gene:cu / 41339 FlyBaseID:FBgn0261808 Length:642 Species:Drosophila melanogaster
Sequence 2:NP_001277670.1 Gene:Cnot6 / 104625 MGIID:2144529 Length:557 Species:Mus musculus


Alignment Length:338 Identity:91/338 - (26%)
Similarity:135/338 - (39%) Gaps:62/338 - (18%)


- Green bases have known domain annotations that are detailed below.


  Fly   333 CPEEALTWEHRKYLIVQEILQNQPDVICLQEVD---HFKFLQTVLGSQNYAGIFFPKPDSPCLYI 394
            ||..||.|::||..|:||||....|:|.||||:   ::.|....|..:.|.|.|.||..:..:..
Mouse   210 CPSWALNWDYRKKAIIQEILSCNADIISLQEVETEQYYSFFLVELKERGYNGFFSPKSRARTMSE 274

  Fly   395 EQNNGPDGCAIFYKRDKLQL----------------QGYDTRILEVWRVQSNQVAIAARLRMR-- 441
            ::....||||||:|.:|..|                :|.:..:..|....:..||:...||..  
Mouse   275 QERKHVDGCAIFFKTEKFTLVQKHTVEFNQLAMANSEGSEAMLNRVMTKDNIGVAVLLELRKELI 339

  Fly   442 --SSGRE--------FCVATTHLK----------ARHGALLAKLRN---EQGRDLIRFVKQFAGD 483
              |||:.        ..||..|:.          .:....|::::|   :..|.|...|....|.
Mouse   340 EMSSGKPHLGTEKQLILVANAHMHWDPEYSDVKLVQTMMFLSEVKNIIDKASRSLKSSVLGECGT 404

  Fly   484 TPLLLCGDFNAEPVEPI--YATILGCDL-------LRLGSAYADVKLDREEILHPNADVGEFVAK 539
            .||:||.|.|:.|...:  |.:..|.:.       ||...:..:...:.:..:........|..|
Mouse   405 IPLVLCADLNSLPDSGVVEYLSTGGVETNHKDFKELRYNESLTNFSCNGKNGMTNGRITHGFKLK 469

  Fly   540 SMKRE--PPYTTWKIREEGEECHTIDYVFYTPDRLK---IKNCLDFPAGEQIGKNRTPSFQYPSD 599
            |....  .|||.:....:|    .|||:||:..:|.   |...||.....:...:..|....|||
Mouse   470 SAYENGLMPYTNYTFDFKG----IIDYIFYSKPQLNTLAILGPLDHHWLVENNISGCPHPLIPSD 530

  Fly   600 HFSLVCDFELLPP 612
            ||||....|||.|
Mouse   531 HFSLFAQLELLLP 543

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
cuNP_001097746.1 EEP 312..609 CDD:469791 87/333 (26%)
Cnot6NP_001277670.1 LRR <51..>133 CDD:443914
LRR 1 52..73
leucine-rich repeat 53..75 CDD:275378
LRR 2 75..96
leucine-rich repeat 76..98 CDD:275378
LRR 3 98..120
leucine-rich repeat 99..121 CDD:275378
LRR 4 121..143
leucine-rich repeat 122..133 CDD:275378
Nuclease domain. /evidence=ECO:0000250 153..557 91/338 (27%)
Deadenylase_CCR4a 191..540 CDD:197340 87/333 (26%)
Blue background indicates that the domain is not in the aligned region.

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