DRSC/TRiP Functional Genomics Resources

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Protein Alignment SdhCL and Sdhc

DIOPT Version :10

Sequence 1:NP_650041.1 Gene:SdhCL / 41324 FlyBaseID:FBgn0037860 Length:261 Species:Drosophila melanogaster
Sequence 2:NP_079597.2 Gene:Sdhc / 66052 MGIID:1913302 Length:169 Species:Mus musculus


Alignment Length:127 Identity:49/127 - (38%)
Similarity:69/127 - (54%) Gaps:3/127 - (2%)


- Green bases have known domain annotations that are detailed below.


  Fly    78 RNMLLGRQLSPHLSIYKIQLTSTLSAFLRISGFVLAVFVWFVGISGLCLQGDMEGFIKKVEKCDC 142
            :|....|.|||||:|||..|...||...|.||..|:..|...|:|.|.|.|:.|.::..| |..|
Mouse    44 KNTSSNRPLSPHLTIYKWSLPMALSVCHRGSGIALSGGVSLFGLSALLLPGNFESYLMFV-KSLC 107

  Fly   143 HG--MVTMAKVMVTMPFAYHTVAGTRHLIWYLNKFLTIPEIYATGYVAVALTIALSAFLLAV 202
            .|  ::..||.::..|..||::.|.|||:|.|.|.|.||:::.:|...|.|.:..|..|.|:
Mouse   108 LGPTLIYSAKFVLVFPLMYHSLNGIRHLLWDLGKGLAIPQVWLSGVAVVVLAVLSSGGLAAL 169

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
SdhCLNP_650041.1 SQR_TypeC_SdhC 84..201 CDD:239579 47/118 (40%)
SdhcNP_079597.2 SQR_TypeC_SdhC 50..152 CDD:239579 42/102 (41%)

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