DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Leash and LDB19

DIOPT Version :9

Sequence 1:NP_650037.2 Gene:Leash / 41320 FlyBaseID:FBgn0037856 Length:520 Species:Drosophila melanogaster
Sequence 2:NP_014967.3 Gene:LDB19 / 854500 SGDID:S000005849 Length:818 Species:Saccharomyces cerevisiae


Alignment Length:643 Identity:115/643 - (17%)
Similarity:207/643 - (32%) Gaps:230/643 - (35%)


- Green bases have known domain annotations that are detailed below.


  Fly     8 ITLDSADRVYFAGDIIRGEIWMN--VNKRTKIRAIKVQVTGKGKCKWMEILRKNSNNNEYSRSLF 70
            :||....:::|....:.....|.  :|.:|||..:|         .|                  
Yeast   144 VTLSLVQKIHFHKPFVPNISSMQTCMNCKTKITNMK---------SW------------------ 181

  Fly    71 YTSKEVYEHSETPLPDFEPRGLELSAGEHTFIFEVALGRQLPSSFKGSYGA-----IKYKMRVLI 130
                |:..:::           :||.|.|::.|...:...:|.|  .|.||     :||::..::
Yeast   182 ----EIQSNTQ-----------DLSVGSHSYPFSYLIPGSVPCS--SSLGATAETQVKYELIAVV 229

  Fly   131 QRPWTFDERHTIPFTVVKNMP-----------LQ-----PMQRSIPSSLEKQVTKTISLFGTRPI 179
                |:.:.|...|:...:.|           ||     .:.||||...:|   .::.:|....:
Yeast   230 ----TYIDPHRNSFSSGHSTPRKEGSSSKKRLLQLAMPIAVTRSIPRGPDK---NSLRVFPPTEL 287

  Fly   180 TLLALLPEDFAVRGE-PLRICATVINNSTT--AVEKLRFTVLQYVTYYSHV-PLRVQKVECIAVA 240
            |..|:||.....:.. ||.:....:::...  .:.||.:.:.:.....:|. |:...::..:...
Yeast   288 TAAAVLPNVVYPKSTFPLEMKLDGVSSGDRRWRMRKLSWRIEETTRVKAHACPVHKHELRQLEEQ 352

  Fly   241 TKETGSVQKKTERSFAH---ELLLPDGAQPTDEQMSGVITIVYELRVEAVLRGFFKNLILNLPFK 302
            .|...|.:.|..||...   ||    |.|               :||..       |.:.|:|.:
Yeast   353 VKIKESEKSKKPRSHIKRYGEL----GPQ---------------IRVAV-------NSLENMPSQ 391

  Fly   303 VYSQDPSNRQSSLRPPPPPRPNDGPPGPELGSGNL-FEPALPVYPSLDSSIGS----PS------ 356
            ....:|...|:         ||...|.   .:||: .:...||....:...||    ||      
Yeast   392 RLPGEPGREQA---------PNSSGPA---STGNVGLDDENPVNEDEEDQPGSEFIHPSDDALRQ 444

  Fly   357 --------------------HSSQFSE-------------------------------CSSINSI 370
                                :||.|:|                               |..:||.
Yeast   445 ELLMQQQRARQQQLQQELKNNSSLFTEEVRIISKGEMKSGWKTDFDNNGKIELVTEIDCMGLNSG 509

  Fly   371 TSD--SSAATL-SPAVGAGTGGMDMS----------YTS---------GSQSSQY--GSPSARTS 411
            .|:  ..|:|| :|:.|.....::::          |.|         ..::.||  |.|     
Yeast   510 VSNPVMHASTLQTPSTGNKKPSINVACDIQDPNLGLYVSHILAVEIVVAEETLQYANGQP----- 569

  Fly   412 LRSSNVPYMPYSSSPLMVQSYPPPHL----PAYPPPESPQYSLLA---LTPPPAGVVAAPPTGGA 469
            :|..|......:::..|....|...|    |.:....:|:...:.   :||..:...........
Yeast   570 IRKPNSKNKKETNNNTMNVHNPDQRLAELSPIFANRNTPKVRRMGPEDITPVNSNKSNHSTNKEK 634

  Fly   470 AAGGAPAYS--QLPSTSASASFLQ------PRQAPGA---HELPPSYEELFGLANAPP 516
            |:.||...:  .:|:.:|....:|      .|...|.   .|:||.|:::..|  :||
Yeast   635 ASNGASNSNIVSVPTGAARVLRMQFRLTVTERSGLGISWDEEVPPIYQDVELL--SPP 690

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
LeashNP_650037.2 Arrestin_N 6..152 CDD:304627 27/161 (17%)
Arrestin_C 178..305 CDD:280848 24/133 (18%)
LDB19NP_014967.3 LDB19 144..346 CDD:404030 45/252 (18%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR11188
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
11.100

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