DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Leash and Arrdc1

DIOPT Version :9

Sequence 1:NP_650037.2 Gene:Leash / 41320 FlyBaseID:FBgn0037856 Length:520 Species:Drosophila melanogaster
Sequence 2:XP_038961502.1 Gene:Arrdc1 / 366001 RGDID:1309961 Length:466 Species:Rattus norvegicus


Alignment Length:570 Identity:128/570 - (22%)
Similarity:196/570 - (34%) Gaps:177/570 - (31%)


- Green bases have known domain annotations that are detailed below.


  Fly     8 ITLDSADRVYFAGDIIRGEIWMNVNKRTKIRAIKVQVTGKGKCKWMEILRKNSNNNEYSRSLFYT 72
            |.|.....||..|:.:.|.:.:.:......|||:  ||..|.|.    :...:|:..      :.
  Rat     9 IRLSQGRVVYSPGEPLAGAVHLRLGAPLPFRAIR--VTCMGSCG----VSNKANDGA------WV 61

  Fly    73 SKEVYEHSETPLPDFEPRGLELSAGEHTFIFEVALGRQLPSSFKGSYGAIKYKMRVLIQRP-WTF 136
            .:|.|.:|...|.|   :| .|..|||.|.|:..|....|:||:|.:|.|.:::|..|..| ::.
  Rat    62 VEESYFNSSLSLAD---KG-SLPPGEHNFPFQFLLPATAPTSFEGPFGKIVHQVRASIDTPRFSK 122

  Fly   137 DERHTIPFTVVKNMPLQPMQRSIPSSLEKQVTKTISLFG-----TRPITLLALLPEDFAVRGEPL 196
            |.:.::.|.::..:.|    .|||...:..|..|...|.     |..:.|.|.......|.|:.|
  Rat   123 DHKCSLVFYILSPLNL----N
SIPDIEQPNVASTTKKFSYKLVKTGSVVLTASTDLRGYVVGQVL 183

  Fly   197 RICATVINNSTTAVEKLRFTVLQYVTYY-------------------SHVPLRVQKVECIA---- 238
            |:.|.:.|.|......:..::||....:                   :|.|:..|||...|    
  Rat   184 RLQADIENQSGKDTSPVVASLLQVRAIWFPEPVPFPWDRRGGCQPAQTHSPVFPQKVSYKAKRWI 248

  Fly   239 -----VATKETGSVQKKTERSFAHELL---LPDGAQPTDEQMSGVITIVYELRVE-------AVL 288
                 :|..|...|:......:..::|   ||..|.|.    ..:|.|.|.|:|.       ..|
  Rat   249 YDVRTIAEVEGTGVKAWRHAQWQEQILVPALPQSALPG----CSLIHIDYYLQVSMKAPEATVTL 309

  Fly   289 RGFFKNLILNLPFKVYSQDPSNRQSSLRPPPPPRPNDGPPGPELGSGNLFEPALPVYPSLDS--- 350
            ..|..|:.:|             |:.|.|.|.|..:.|          |..|.:|..|..:.   
  Rat   310 PLFVGNIAVN-------------QTPLSPCPGPGSSPG----------LLSPVVPSAPPQEEAEA 351

  Fly   351 -----------SIGSPSHSSQFSECSSINSITSDSSAATLSPAVGAGTGGMDMSYTSGSQSSQYG 404
                       |:.:.|||.|....:::.|:    |..|:.|.|                  |.|
  Rat   352 VASGPHFSDPVSLSTKSHSQQQPLSTTLGSV----SVTTIEPCV------------------QVG 394

  Fly   405 SPSARTSLRSSNVPYMPYSSSPLMVQSYPPPHLPAYPPPESPQYSLLALTPPPAGVVAAPPTGGA 469
            || ||.||                           :||        |.::     :.|..|....
  Rat   395 SP-ARHSL---------------------------HPP--------LCIS-----IGATVPYFAE 418

  Fly   470 AAGGAPAYSQLPSTSASASFLQPRQAPGA--HELPPSYEELFGLANAPPG 517
            .:||       |..:.||..|.|..:...  :|.|||||:..|......|
  Rat   419 GSGG-------PVPTTSALILPPEYSSWGYPYEAPPSYEQSCGAGGTDVG 461

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
LeashNP_650037.2 Arrestin_N 6..152 CDD:304627 38/144 (26%)
Arrestin_C 178..305 CDD:280848 34/164 (21%)
Arrdc1XP_038961502.1 Arrestin_N 7..139 CDD:419887 39/149 (26%)
Arrestin_C 162..316 CDD:214976 33/157 (21%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3780
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D311636at33208
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR11188
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
43.920

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