DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Tpc1 and Slc25a16

DIOPT Version :9

Sequence 1:NP_650034.1 Gene:Tpc1 / 41316 FlyBaseID:FBgn0037852 Length:332 Species:Drosophila melanogaster
Sequence 2:XP_038954788.1 Gene:Slc25a16 / 361836 RGDID:1311311 Length:991 Species:Rattus norvegicus


Alignment Length:90 Identity:23/90 - (25%)
Similarity:36/90 - (40%) Gaps:29/90 - (32%)


- Green bases have known domain annotations that are detailed below.


  Fly   209 MGTNFMAYRLFSDWACAFLEVSDRSQLPTWTL------LGLGAS---------SGMLSKTIVYPF 258
            :|..|.:.|        |:.|.|..|||...|      ||:..|         |.::..||.|..
  Rat   773 LGPLFFSRR--------FVLVGDHKQLPPLVLNREARALGMSESLFKRLERNESAVVQLTIQYRM 829

  Fly   259 DLIKKRLQIQGFESNRQTFGQTLQC 283
            :  :|.:.:    ||:.|:...|:|
  Rat   830 N--RKIMSL----SNKLTYEGKLEC 848

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Tpc1NP_650034.1 Mito_carr 29..123 CDD:278578
PTZ00169 33..329 CDD:240302 23/90 (26%)
Mito_carr 153..222 CDD:278578 3/12 (25%)
Mito_carr 233..328 CDD:278578 17/66 (26%)
Slc25a16XP_038954788.1 DNA2_N-like 127..366 CDD:411722
TIGR00376 471..931 CDD:273041 23/90 (26%)
DEXXQc_DNA2 625..828 CDD:350799 16/62 (26%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG0752
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
32.810

Return to query results.
Submit another query.