DRSC/TRiP Functional Genomics Resources

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Protein Alignment Sodh-2 and sodh-1

DIOPT Version :9

Sequence 1:NP_524311.1 Gene:Sodh-2 / 41313 FlyBaseID:FBgn0022359 Length:360 Species:Drosophila melanogaster
Sequence 2:NP_505991.1 Gene:sodh-1 / 179627 WormBaseID:WBGene00010790 Length:349 Species:Caenorhabditis elegans


Alignment Length:341 Identity:91/341 - (26%)
Similarity:147/341 - (43%) Gaps:53/341 - (15%)


- Green bases have known domain annotations that are detailed below.


  Fly    16 LRLEQRPIPEIADDEVLLAMDSVGICGSDVHYLAHGRIGDF--VLTKPMIIGHEAAGVVAKLGKK 78
            |.:.|.|:|..||||:|:.::..|||.||:|..    :||.  :...|::.|||.||.|.::||.
 Worm    21 LEVRQVPVPSPADDEILVKIEYSGICHSDLHVW----LGDLKDMSVCPLVGGHEGAGSVVQIGKN 81

  Fly    79 VTTLKVGDRVAIE-PGVPCRYCDHCKQGRYNLC---ADMVFCATPPYDGNLTRYYKHAADFCFKL 139
            ||..::||:..:: ....|..|:.||:|...||   .:..|..:..:...||.....||    |:
 Worm    82 VTGWQLGDKAGVKLMNFNCLNCEFCKKGHEPLCHHIQNYGFDRSGTFQEYLTIRGVDAA----KI 142

  Fly   140 PDHVSMEEGALLEPLSVGVH-ACRRAGVGLGSKVLILGA-GPIGLVTLLAAQAMGASEILITDLV 202
            ....::...|.:....|.|: |.:.:.|..|..:::.|| |.:|.:.:..|.||| ..::..|..
 Worm   143 NKDTNLAAAAPILCAGVTVYKALKESNVAPGQIIVLTGAGGGLGSLAIQYACAMG-MRVVAMDHG 206

  Fly   203 QQRLDVAKELGATHTLLLQRDQSAEETVKVV-HQT-MSE-VPDKSIDCCGAESSARLAIFATRSG 264
            .:... .|.|||...:      .|.||..:| |.| ::| .|...|:...|......|:...|..
 Worm   207 SKEAH-CKGLGAEWFV------DAFETPDIVSHITKLTEGGPHGVINFAVARKPMEQAVEYVRKR 264

  Fly   265 GVVVVVGM---------------GAPEVKLPLINAL-----AREIDIRGVFRY------CNDYSA 303
            |.||.||:               .|..:|..::.:.     |.|...||:.:.      ..|..|
 Worm   265 GTVVFVGLPKDSKVTFDTTPFIFNAITIKGSIVGSRLDVDEAMEFVTRGIVKVPLELVKLEDVPA 329

  Fly   304 ALALVASGKVNVKRLV 319
            ....:..||:|.:.:|
 Worm   330 VYQRMLDGKINSRAVV 345

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Sodh-2NP_524311.1 PLN02702 4..346 CDD:215378 91/341 (27%)
sorbitol_DH 8..349 CDD:176188 91/341 (27%)
sodh-1NP_505991.1 AdhP 6..348 CDD:223992 91/341 (27%)
CAD3 9..347 CDD:176257 91/341 (27%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D605481at33208
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.920

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