DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Tsp86D and tspan17

DIOPT Version :9

Sequence 1:NP_001262468.1 Gene:Tsp86D / 41310 FlyBaseID:FBgn0037848 Length:316 Species:Drosophila melanogaster
Sequence 2:NP_001006754.1 Gene:tspan17 / 448429 XenbaseID:XB-GENE-954574 Length:270 Species:Xenopus tropicalis


Alignment Length:273 Identity:119/273 - (43%)
Similarity:168/273 - (61%) Gaps:14/273 - (5%)


- Green bases have known domain annotations that are detailed below.


  Fly    23 HFS--YVSSCVKYMIFLLNFLFWLFGGLLLAIGVYAFMDKLMDGNGWLRLDTIYDV-IFNISLVM 84
            ||.  .||.||||.:|..|.:|||.|...||||::|:.:|.:..|    :.:|.|: .|:...:.
 Frog     7 HFKGPEVSCCVKYFLFGFNIVFWLLGAAFLAIGLWAWAEKGVLSN----ISSITDLGGFDPVWLF 67

  Fly    85 IIAGVIVFTVSFAGCLGALRENTWLLKLYSMCLLLFFILEMSLAIICFVFPQYMNSFLEYQFTDK 149
            |:.|.::|.:.||||:|||||||.|||.:|:.|.|.|.||::..|:.|||..::...|.: |.:.
 Frog    68 IVTGAVMFVLGFAGCIGALRENTTLLKFFSVFLGLIFFLELTAGILAFVFKDWIKDQLNF-FINN 131

  Fly   150 IIHSYRDDSDLQNFIDFAQQEFNCCGLSNAGYQDWSKNEYFNC--SSPSVERCGVPYSCCINATD 212
            .:.:||||.||||.|||||:.::|||..  |..||:.|.||||  |:||.||||||:|||:.  |
 Frog   132 NVKAYRDDIDLQNLIDFAQEYWSCCGAH--GPNDWNLNIYFNCTDSNPSRERCGVPFSCCVK--D 192

  Fly   213 ISSGLVNIMCGYGVQVRSVAAASKRIWTSGCIEIVRVWVERNLYVIAGVALGIALLQLFVIYLAK 277
            .:..:.|..|||.|:::........|:|.||:.....|::.||.|:|||.:.|||||:|.|.||:
 Frog   193 PAEDVPNTQCGYDVRLKLELEQQSYIYTKGCVGQFEKWLQDNLIVVAGVFVAIALLQIFGICLAQ 257

  Fly   278 TLEGQIDLQKSRW 290
            .|...|...|:.|
 Frog   258 NLVSDIKAVKANW 270

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Tsp86DNP_001262468.1 Tetraspannin 51..283 CDD:278750 101/234 (43%)
penumbra_like_LEL 132..255 CDD:239411 52/124 (42%)
tspan17NP_001006754.1 TM4SF9_like_LEL 115..235 CDD:239412 52/124 (42%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D574036at33208
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X349
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
22.010

Return to query results.
Submit another query.